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protein coding gene - tpp2 (SPAP8A3.12c) - tripeptidyl-peptidase II Tpp2, implicated in protein maturation, or protein catabolic process

Gene summary

Standard name
tpp2
Systematic ID
SPAP8A3.12c
Product
tripeptidyl-peptidase II Tpp2, implicated in protein maturation, or protein catabolic process
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
ppp62
UniProt ID
Q9UT05
Characterisation status
conserved unknown
Feature type
mRNA gene
Genomic location
chromosome I: 5336681..5340541 reverse strand

Annotation

Disease association

MONDO:0030971 - immunodeficiency 78 with autoimmunity and developmental delay

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GO cellular component

GO:0005829 - cytosol

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GO molecular function

GO:0004252 - serine-type endopeptidase activity

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GO:0008240 - tripeptidyl-peptidase activity

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Modification

MOD:00046 - O-phospho-L-serine

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Qualitative gene expression

PomGeneEx:0000018 - protein level increased

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PomGeneEx:0000011 - RNA level increased

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Quantitative gene expression

PBO:0006310 - protein level

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PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0000251 - decreased cell population growth on galactose carbon source

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Genotypes:

FYPO:0009076 - increased cell population growth on sucrose carbon source

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Genotypes:

FYPO:0002085 - normal vegetative cell growth

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Genotypes:

FYPO:0000764 - resistance to cycloheximide

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Genotypes:

FYPO:0009043 - resistance to potassium chloride and sodium dodecyl sulfate

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Genotypes:

FYPO:0000327 - resistance to trichostatin A

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Genotypes:

FYPO:0000096 - sensitive to cadmium

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Genotypes:

FYPO:0000799 - sensitive to diamide

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Genotypes:

FYPO:0007931 - sensitive to egtazic acid

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Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

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Genotypes:

FYPO:0001719 - sensitive to lithium

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Genotypes:

FYPO:0009086 - sensitive to lithium chloride and sodium dodecyl sulfate

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Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

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Genotypes:

FYPO:0000115 - sensitive to valproic acid

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Genotypes:

FYPO:0001234 - slow vegetative cell population growth

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Genotypes:

FYPO:0002060 - viable vegetative cell population

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Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

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Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0000055 - no apparent S. cerevisiae ortholog

PBO:0006222 - predominantly single copy (one to one)

Warnings

PBO:0000070 - gene structure updated

Protein features

IDNameInterPro nameDB name
PF12580TPPIITPPII_Ig-like-2PFAM
PF21223TPPII_Ig-like-1TPPII_Ig-like-1PFAM
PF00082Peptidase_S8Peptidase_S8/S53_domPFAM
PF21316TPPII_GBDTPPII_GBDPFAM
cd04857Peptidases_S8_Tripeptidyl_Aminopeptidase_IITPP_II_domainCDD
PS00138SUBTILASE_SERPeptidase_S8_Ser-ASPROSITE_PATTERNS
PS00137SUBTILASE_HISPeptidase_S8_His-ASPROSITE_PATTERNS
PS51892SUBTILASEPROSITE_PROFILES
PR00723SUBTILISINPeptidase_S8_subtilisin-relPRINTS
G3DSA:3.40.50.200:FF:000013FUNFAM
SSF52743Subtilisin-likePeptidase_S8/S53_dom_sfSUPERFAMILY
G3DSA:1.25.40.710TPPII_C_sfGENE3D
G3DSA:3.40.50.200Peptidase S8/S53 domainPeptidase_S8/S53_dom_sfGENE3D
G3DSA:2.60.40.3170TPPII_Ig-like_sfGENE3D
G3DSA:2.20.25.690GENE3D
PTHR43806PEPTIDASE S8Peptidase_S8_subtilisin-likePANTHER

Orthologs

References / Literature

PMID:23173672 - Identification of novel genes involved in DNA damage response by screening a genome-wide Schizosaccharomyces pombe deletion library.
Pan X et al. BMC Genomics 2012 Nov 23;13:662
PMID:19467630 - Development, evaluation and application of tripeptidyl-peptidase II sequence signatures.
Eriksson S et al. Arch Biochem Biophys 2009 Apr 01;484(1):39-45
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:16491466 - Construction of a protease-deficient strain set for the fission yeast Schizosaccharomyces pombe, useful for effective production of protease-sensitive heterologous proteins.
Idiris A et al. Yeast 2006 Jan 30;23(2):83-99
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:34496258 - Transcription and chromatin-based surveillance mechanism controls suppression of cryptic antisense transcription.
Heo DH et al. Cell Rep 2021 Sep 07;36(10):109671
PMID:39705284 - Proteomic and phosphoproteomic analyses reveal that TORC1 is reactivated by pheromone signaling during sexual reproduction in fission yeast.
Bérard M et al. PLoS Biol 2024 Dec 20;22(12):e3002963
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
GO_REF:0000002 - Comments
PMID:12618370 - Schizosaccharomyces pombe essential genes: a pilot study.
Decottignies A et al. Genome Res 2003 Mar;13(3):399-406
PMID:24013502 - Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries.
Wang J et al. Genes Dev 2013 Sep 01;27(17):1886-902
PMID:16537923 - Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.
Todd BL et al. Mol Cell Biol 2006 Apr;26(7):2817-31
PMID:25452419 - Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence.
Sideri T et al. G3 (Bethesda) 2014 Dec 01;5(1):145-55
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:26167880 - SR protein kinases promote splicing of nonconsensus introns.
Lipp JJ et al. Nat Struct Mol Biol 2015 Aug;22(8):611-7
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12