protein coding gene - SPAPB18E9.05c - dubious
Gene summary
Systematic ID
SPAPB18E9.05c
Product
dubious
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
Q8TFG3
Characterisation status
dubious
Feature type
mRNA gene
Genomic location
chromosome I: 3986648..3986920 reverse strand
Annotation
GO cellular component
GO:0005783
-
endoplasmic reticulum
References:
PMID:16823372
Protein sequence feature
SO:0001812
-
transmembrane_helix
References:
PMID:11152613
Qualitative gene expression
PomGeneEx:0000012
-
RNA level decreased
References:
PMID:33313903
PMID:38269097
PomGeneEx:0000011
-
RNA level increased
References:
PMID:27984744
Quantitative gene expression
PBO:0011963
-
RNA level
References:
PMID:23101633
Protein features
ID
Name
InterPro name
DB name
Transmembrane alpha helix
DeepTMHMM
References / Literature
PMID:11152613
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A et al. J Mol Biol 2001 Jan 19;305(3):567-80
PMID:33313903
-
Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.
Rubio A et al. Nucleic Acids Res 2021 Jan 11;49(1):383-399
PMID:16823372
-
ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:27984744
-
Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:23101633
-
Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:38269097
-
Rapamycin-sensitive mechanisms confine the growth of fission yeast below the temperatures detrimental to cell physiology.
Morozumi Y et al. iScience 2024 Jan 19;27(1):108777
PMID:31276588
-
Inositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3' processing and transcription termination.
Sanchez AM et al. Nucleic Acids Res 2019 Sep 19;47(16):8452-8469