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protein coding gene - rev1 (SPBC1347.01c) - deoxycytidyl transferase Rev1

Gene summary

Standard name
rev1
Systematic ID
SPBC1347.01c
Product
deoxycytidyl transferase Rev1
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
SPBC215.16c
UniProt ID
O94623
ORFeome ID
29/29E01
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 4061232..4064413 reverse strand

Annotation

GO biological process

GO:0070987 - error-free translesion synthesis

References:

GO:0042276 - error-prone translesion synthesis

References:

GO:0043504 - mitochondrial DNA repair

References:

GO cellular component

GO:0000262 - mitochondrial chromosome

References:

GO:0005739 - mitochondrion

References:

GO:0072686 - mitotic spindle

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GO:0005730 - nucleolus

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GO:0005634 - nucleus

References:

GO:0035861 - site of double-strand break

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GO molecular function

GO:0003684 - damaged DNA binding

References:

GO:0017125 - deoxycytidyl transferase activity

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GO:0003887 - DNA-directed DNA polymerase activity

References:

GO:0060090 - molecular adaptor activity

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Multi-locus phenotype

FYPO:0005327 - abolished error-free translesion synthesis of cyclobutane pyrimidine dimers

References:

Genotypes:

FYPO:0005324 - decreased error-free translesion synthesis of cyclobutane pyrimidine dimers

References:

Genotypes:

FYPO:0001742 - increased isochromosome formation

References:

Genotypes:

FYPO:0000256 - mutator

References:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

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Genotypes:

FYPO:0000091 - sensitive to thiabendazole

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Genotypes:

FYPO:0005623 - sensitive to UV during late mitotic G2 phase

References:

Genotypes:

Protein features

PBO:0111779 - BRCT domain

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

References:

Quantitative gene expression

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0005330 - decreased error-free translesion synthesis of pyrimidine-pyrimidone 6-4 photoproducts

References:

Genotypes:

FYPO:0005331 - decreased error-prone translesion synthesis of pyrimidine-pyrimidone 6-4 photoproducts

References:

Genotypes:

FYPO:0006518 - loss of viability in G0

References:

Genotypes:

FYPO:0005328 - normal error-free translesion synthesis of cyclobutane pyrimidine dimers

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Genotypes:

FYPO:0007553 - normal G1 to G0 transition

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Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

References:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

References:

Genotypes:

FYPO:0002102 - normal mitotic DNA damage checkpoint during cellular response to UV

References:

Genotypes:

FYPO:0005626 - normal mitotic G2 DNA damage checkpoint during cellular response to UV during mitotic S phase

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Genotypes:

FYPO:0001420 - normal vegetative cell population growth rate

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Genotypes:

FYPO:0005625 - normal viability following cellular response to UV during mitotic S phase

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Genotypes:

FYPO:0009031 - resistance to bleomycin

References:

Genotypes:

FYPO:0000763 - resistance to cadmium

References:

Genotypes:

FYPO:0001583 - resistance to lithium

References:

Genotypes:

FYPO:0009085 - resistance to lithium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0009043 - resistance to potassium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0001098 - sensitive to 4-nitroquinoline N-oxide

References:

Genotypes:

FYPO:0000102 - sensitive to cisplatin

References:

Genotypes:

FYPO:0000104 - sensitive to cycloheximide

References:

Genotypes:

FYPO:0007931 - sensitive to egtazic acid

References:

Genotypes:

FYPO:0005623 - sensitive to UV during late mitotic G2 phase

References:

Genotypes:

FYPO:0003656 - sensitive to vanadate

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF00817IMSUmuCPfam
PF11799IMS_CDNA_pol_Y-fam_little_fingerPfam
PF16589BRCT_2BRCT_domPfam
PF16727REV1_CRev1_CPfam
PF21999IMS_HHH_1IMS_HHH_1Pfam
cd01701PolY_Rev1CDD
cd12145Rev1_CCDD
cd17719BRCT_Rev1CDD
PS50172BRCTBRCT_domPROSITE profiles
PS50173UMUCUmuCPROSITE profiles
PS52064UBMPROSITE profiles
SM00292BRCTBRCT_domSMART
G3DSA:1.20.58.1280:FF:000004CATH-FunFam
G3DSA:3.30.1490.100:FF:000001CATH-FunFam
G3DSA:3.40.1170.60:FF:000016CATH-FunFam
G3DSA:3.40.50.10190:FF:000011CATH-FunFam
G3DSA:1.10.150.20CATH-Gene3D
G3DSA:1.20.58.1280Rev1_C_sfCATH-Gene3D
G3DSA:3.30.1490.100DNA_pol_Y-fam_lit_finger_sfCATH-Gene3D
G3DSA:3.30.70.270Rev_trsase/Diguanyl_cyclaseCATH-Gene3D
G3DSA:3.40.1170.60CATH-Gene3D
G3DSA:3.40.50.10190BRCT_dom_sfCATH-Gene3D
G3DSA:6.10.250.1490CATH-Gene3D
SSF100879DNA_pol_Y-fam_lit_finger_sfSUPERFAMILY
SSF52113BRCT_dom_sfSUPERFAMILY
SSF56672DNA/RNA_pol_sfSUPERFAMILY
PTHR45990PANTHER
PIRSF036573REV1REV1PIRSF
mobidb-lite-Disorderdisorder_predictionMobiDB-Disorder
mobidb-lite-Polardisorder_predictionMobiDB-Polar
mobidb-lite-Polyampholytedisorder_predictionMobiDB-Polyampholyte

Orthologs

References / Literature

GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:40015273 - A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin.
Skribbe M et al. Mol Cell 2025 Feb 19;
PMID:23628481 - A proteome-wide visual screen identifies fission yeast proteins localizing to DNA double-strand breaks.
Yu Y et al. DNA Repair (Amst) 2013 Jun 01;12(6):433-43
PMID:26652183 - Coordination of DNA damage tolerance mechanisms with cell cycle progression in fission yeast.
Callegari AJ et al. Cell Cycle 2016;15(2):261-73
PMID:19714215 - The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1-S via negative feedback.
Aligianni S et al. PLoS Genet 2009 Aug;5(8):e1000626
PMID:25313826 - The chromatin assembly factor 1 promotes Rad51-dependent template switches at replication forks by counteracting D-loop disassembly by the RecQ-type helicase Rqh1.
Pietrobon V et al. PLoS Biol 2014 Oct;12(10):e1001968
PMID:19264558 - Screening a genome-wide S. pombe deletion library identifies novel genes and pathways involved in genome stability maintenance.
Deshpande GP et al. DNA Repair (Amst) 2009 May 01;8(5):672-9
PMID:25375137 - Systematic analysis of the role of RNA-binding proteins in the regulation of RNA stability.
Hasan A et al. PLoS Genet 2014 Nov;10(11):e1004684
GO_REF:0000036 - Manual annotations that require more than one source of functional data to support the assignment of the associated GO term
PMID:41330900 - PolySUMOylation of PCNA and Rad52 restricts centromeric recombination in fission yeast.
Markowska K et al. Nat Commun 2025 Dec 02;16(1):10837
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:20404181 - Postreplication gaps at UV lesions are signals for checkpoint activation.
Callegari AJ et al. Proc Natl Acad Sci U S A 2010 May 04;107(18):8219-24
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:20453833 - Rad8Rad5/Mms2-Ubc13 ubiquitin ligase complex controls translesion synthesis in fission yeast.
Coulon S et al. EMBO J 2010 Jun 16;29(12):2048-58
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:33260998 - High-Throughput Flow Cytometry Combined with Genetic Analysis Brings New Insights into the Understanding of Chromatin Regulation of Cellular Quiescence.
Zahedi Y et al. Int J Mol Sci 2020 Nov 27;21(23)
PMID:41525994 - Transcriptional PBR cycles at pericentromeric repeats cause gross chromosomal rearrangements through Rad52-dependent ADR-loop formation.
Xu R et al. Nucleic Acids Res 2026 Jan 05;54(1)
PMID:22064477 - The RecQ4 orthologue Hrq1 is critical for DNA interstrand cross-link repair and genome stability in fission yeast.
Groocock LM et al. Mol Cell Biol 2012 Jan;32(2):276-87
PMID:20118936 - Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.
Lantermann AB et al. Nat Struct Mol Biol 2010 Feb;17(2):251-7
GO_REF:0000002 - Comments
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:34228709 - Expression of the cancer-associated DNA polymerase ε P286R in fission yeast leads to translesion synthesis polymerase dependent hypermutation and defective DNA replication.
Soriano I et al. PLoS Genet 2021 Jul;17(7):e1009526
PMID:18242152 - Comparative analysis of in vivo interactions between Rev1 protein and other Y-family DNA polymerases in animals and yeasts.
Kosarek JN et al. DNA Repair (Amst) 2008 Mar 01;7(3):439-51
GO_REF:0000111 - Gene Ontology annotations Inferred by Curator (IC) using at least one Inferred by Sequence Similarity (ISS) annotation to support the inference
PMID:26147350 - The Protein Level of Rev1, a TLS Polymerase in Fission Yeast, Is Strictly Regulated during the Cell Cycle and after DNA Damage.
Uchiyama M et al. PLoS One 2015;10(7):e0130000
PMID:27473316 - Characterization of a Novel MMS-Sensitive Allele of Schizosaccharomyces pombe mcm4.
Ranatunga NS et al. G3 (Bethesda) 2016 Oct 13;6(10):3049-3063