PomBase home

protein coding gene - sam1 (SPBC14F5.05c) - S-adenosylmethionine synthetase

Gene summary

Standard name
sam1
Systematic ID
SPBC14F5.05c
Product
S-adenosylmethionine synthetase
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
O60198
ORFeome ID
32/32E09
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 4162069..4163858 reverse strand

Annotation

PBO:0004835 - 2.5.1.6

Disease association

MONDO:0000351 - disorder of methionine catabolism

References:

MONDO:0004736 - inborn disorder of amino acid metabolism

References:

MONDO:0005066 - metabolic disease

References:

MONDO:0009607 - methionine adenosyltransferase deficiency

References:

GO biological process

GO:0006556 - S-adenosylmethionine biosynthetic process

References:

GO cellular component

GO:0005829 - cytosol

References:

GO:0005634 - nucleus

References:

GO molecular function

GO:0005524 - ATP binding

References:

GO:0004478 - methionine adenosyltransferase activity

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

MOD:00047 - O-phospho-L-threonine

References:

MOD:00048 - O4'-phospho-L-tyrosine

References:

MOD:01148 - ubiquitinylated lysine

References:

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

References:

PomGeneEx:0000012 - RNA level decreased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0000400 - abnormal cell cycle arrest at mitotic G2/M phase transition

References:

Genotypes:

FYPO:0002955 - abnormal G0 to G1 transition

References:

Genotypes:

FYPO:0000427 - abnormal G1 to G0 transition

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0006698 - decreased cellular 5-phosphoribosyl diphosphate level

References:

Genotypes:

FYPO:0006702 - decreased cellular adenine level

References:

Genotypes:

FYPO:0006700 - decreased cellular CDP level

References:

Genotypes:

FYPO:0006699 - decreased cellular hercynylcysteine sulfoxide level during vegetative growth

References:

Genotypes:

FYPO:0006705 - decreased cellular pentose phosphate level

References:

Genotypes:

FYPO:0006696 - decreased cellular S-adenosyl-L-homocysteine level during vegetative growth

References:

Genotypes:

FYPO:0006695 - decreased cellular S-adenosyl-L-methionine level during vegetative growth

References:

Genotypes:

FYPO:0006704 - decreased cellular sedoheptulose-7-phosphate level

References:

Genotypes:

FYPO:0006703 - decreased cellular UDP level

References:

Genotypes:

FYPO:0006701 - decreased cellular UMP level

References:

Genotypes:

FYPO:0006693 - decreased histone H3-K4 dimethylation during G0

References:

Genotypes:

FYPO:0002367 - decreased histone H3-K4 dimethylation during vegetative growth

References:

Genotypes:

FYPO:0006694 - decreased histone H3-K4 trimethylation during G0

References:

Genotypes:

FYPO:0002368 - decreased histone H3-K4 trimethylation during vegetative growth

References:

Genotypes:

FYPO:0003865 - decreased protein level during G0

References:

Genotypes:

FYPO:0001324 - decreased protein level during vegetative growth

References:

Genotypes:

FYPO:0004555 - growth auxotrophic for choline

References:

Genotypes:

FYPO:0006697 - increased cellular methionine level

References:

Genotypes:

FYPO:0002421 - inviable after spore germination, single or double cell division, abnormal cell shape

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0006518 - loss of viability in G0

References:

Genotypes:

FYPO:0002672 - normal growth on rapamycin

References:

Genotypes:

FYPO:0000717 - sensitive to actinomycin D

References:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0002705 - sensitive to methionine

References:

Genotypes:

FYPO:0002547 - sensitive to nicotinamide

References:

Genotypes:

FYPO:0002344 - sensitive to phleomycin

References:

Genotypes:

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF02773S-AdoMet_synt_CS-AdoMet_synt_CPFAM
PF02772S-AdoMet_synt_MS-AdoMet_synt_centralPFAM
PF00438S-AdoMet_synt_NS-AdoMet_synt_NPFAM
cd18079S-AdoMet_syntCDD
PS00376ADOMET_SYNTHASE_1ADOMET_SYNTHASE_CSPROSITE_PATTERNS
PS00377ADOMET_SYNTHASE_2ADOMET_SYNTHASE_CSPROSITE_PATTERNS
G3DSA:3.30.300.10:FF:000004FUNFAM
G3DSA:3.30.300.10:FF:000001FUNFAM
G3DSA:3.30.300.10:FF:000003FUNFAM
SSF55973S-adenosylmethionine synthetaseS-AdoMet_synthetase_sfamSUPERFAMILY
G3DSA:3.30.300.10GENE3D
PTHR11964S-ADENOSYLMETHIONINE SYNTHETASES-AdoMet_synthetasePANTHER
PIRSF000497MATS-AdoMet_synthetasePIRSF
MF_00086S_AdoMet_synth1S-AdoMet_synthetaseHAMAP
TIGR01034metKS-AdoMet_synthetaseNCBIFAM

Orthologs

References / Literature

PMID:10620770 - Gene sam1 encoding adenosylmethionine synthetase: effects of its expression in the fission yeast Schizosaccharomyces pombe.
Hilti N et al. Yeast 2000 Jan 15;16(1):1-10
PMID:39705284 - Proteomic and phosphoproteomic analyses reveal that TORC1 is reactivated by pheromone signaling during sexual reproduction in fission yeast.
Bérard M et al. PLoS Biol 2024 Dec 20;22(12):e3002963
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:31767786 - Interactions between SAM and the 5' UTR mRNA of the sam1 gene regulate translation in S. pombe .
Zhang X et al. RNA 2020 Feb;26(2):150-161
PMID:15277777 - Interaction between a negative regulator (Msa2/Nrd1) and a positive regulator (Cpc2) of sexual differentiation in Schizosaccharomyces pombe.
Jeong HT et al. Biosci Biotechnol Biochem 2004 Jul;68(7):1621-6
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PB_REF:0000003 - Disease Association Curation
PMID:23695164 - Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways.
Das J et al. Sci Signal 2013 May 21;6(276):ra38
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:33823663 - A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans.
Halova L et al. Open Biol 2021 Apr;11(4):200405
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:30240645 - S-Adenosylmethionine Synthetase Is Required for Cell Growth, Maintenance of G0 Phase, and Termination of Quiescence in Fission Yeast.
Hayashi T et al. iScience 2018 Jul 27;5:38-51
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:34496258 - Transcription and chromatin-based surveillance mechanism controls suppression of cryptic antisense transcription.
Heo DH et al. Cell Rep 2021 Sep 07;36(10):109671
PMID:26771498 - A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.
Vo TV et al. Cell 2016 Jan 14;164(1-2):310-323
PMID:20605454 - A gene-specific requirement of RNA polymerase II CTD phosphorylation for sexual differentiation in S. pombe.
Coudreuse D et al. Curr Biol 2010 Jun 22;20(12):1053-64
PMID:28218250 - Chromatin remodeller Fun30 Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.
Lee J et al. Nat Commun 2017 Feb 20;8:14527
PMID:37970674 - SUMOylation regulates Lem2 function in centromere clustering and silencing.
Strachan J et al. J Cell Sci 2023 Dec 01;136(23)
PMID:39358553 - Ageing-associated long non-coding RNA extends lifespan and reduces translation in non-dividing cells.
Anver S et al. EMBO Rep 2024 Oct 02;
PMID:29996109 - Quantitative Phosphoproteomics Reveals the Signaling Dynamics of Cell-Cycle Kinases in the Fission Yeast Schizosaccharomyces pombe.
Swaffer MP et al. Cell Rep 2018 Jul 10;24(2):503-514
PMID:26412298 - A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.
Beckley JR et al. Mol Cell Proteomics 2015 Dec;14(12):3132-41
PMID:21652630 - Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis.
Snaith HA et al. J Cell Sci 2011 Jul 01;124(Pt 13):2187-99
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:30355493 - Expanded Interactome of the Intrinsically Disordered Protein Dss1.
Schenstrøm SM et al. Cell Rep 2018 Oct 23;25(4):862-870
PMID:26167880 - SR protein kinases promote splicing of nonconsensus introns.
Lipp JJ et al. Nat Struct Mol Biol 2015 Aug;22(8):611-7
PMID:24634168 - Proteome-wide search for PP2A substrates in fission yeast.
Bernal M et al. Proteomics 2014 Jun;14(11):1367-80
PMID:31064814 - Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast.
Larochelle M et al. J Cell Sci 2019 May 31;132(11)
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
GO_REF:0000002 - Comments
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:25375137 - Systematic analysis of the role of RNA-binding proteins in the regulation of RNA stability.
Hasan A et al. PLoS Genet 2014 Nov;10(11):e1004684