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protein coding gene - nak1 (SPBC17F3.02) - PAK-related GC kinase Nak1

Gene summary

Standard name
nak1
Systematic ID
SPBC17F3.02
Product
PAK-related GC kinase Nak1
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
orb3, mor4
UniProt ID
O75011
ORFeome ID
39/39F06
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 2482067..2484425 reverse strand

Annotation

GO biological process

GO:0030950 - establishment or maintenance of actin cytoskeleton polarity

References:

GO:0007163 - establishment or maintenance of cell polarity

References:

GO:2000247 - positive regulation of establishment or maintenance of bipolar cell polarity regulating cell shape

References:

GO:0071574 - protein localization to medial cortex

References:

GO:0062200 - RAM/MOR signaling

References:

GO:2000100 - regulation of establishment or maintenance of bipolar cell polarity regulating cell shape

References:

GO:0070507 - regulation of microtubule cytoskeleton organization

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GO cellular component

GO:0030479 - actin cortical patch

References:

GO:0032153 - cell division site

References:

GO:0005737 - cytoplasm

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GO:0005829 - cytosol

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GO:0110085 - mitotic actomyosin contractile ring

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GO:0044732 - mitotic spindle pole body

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GO:0071958 - new mitotic spindle pole body

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GO molecular function

GO:0005515 - protein binding

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GO:0004672 - protein kinase activity

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GO:0004674 - protein serine/threonine kinase activity

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Modification

MOD:00046 - O-phospho-L-serine

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MOD:00047 - O-phospho-L-threonine

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MOD:00696 - phosphorylated residue

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Multi-locus phenotype

FYPO:0001418 - abnormal microtubule cytoskeleton morphology during vegetative growth

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Genotypes:

FYPO:0002561 - abolished protein localization to actomyosin contractile ring

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Genotypes:

FYPO:0002033 - abolished protein phosphorylation during vegetative growth

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Genotypes:

FYPO:0003440 - cell lysis during cytokinesis

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Genotypes:

FYPO:0006100 - decreased protein localization to cytoplasm, with protein mislocalized to nucleus

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Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0002021 - dispersed actin cortical patch localization during vegetative growth

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Genotypes:

FYPO:0001122 - elongated vegetative cell

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Genotypes:

FYPO:0000650 - increased septation index

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Genotypes:

FYPO:0000839 - inviable elongated mononucleate aseptate cell

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Genotypes:

FYPO:0002187 - inviable normal volume spheroid vegetative cell

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Genotypes:

FYPO:0004104 - inviable spherical vegetative cell

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0008233 - microtubule bundles present in normal numbers

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Genotypes:

FYPO:0000118 - multiseptate vegetative cell

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Genotypes:

FYPO:0001294 - normal actin cortical patch localization

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Genotypes:

FYPO:0003717 - normal actin cytoskeleton morphology during vegetative growth

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Genotypes:

FYPO:0003702 - normal microtubule cytoskeleton morphology during vegetative growth

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Genotypes:

FYPO:0000744 - normal protein localization to actin cortical patch

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Genotypes:

FYPO:0001788 - normal protein localization to cytoplasm

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Genotypes:

FYPO:0000776 - normal protein phosphorylation during vegetative growth

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Genotypes:

FYPO:0000673 - normal septum assembly

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Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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Genotypes:

FYPO:0003250 - premature septum assembly

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Genotypes:

FYPO:0000129 - spherical vegetative cell

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Genotypes:

FYPO:0000021 - spheroid vegetative cell

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Genotypes:

FYPO:0000024 - stubby vegetative cell

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Genotypes:

FYPO:0000647 - vegetative cell lysis

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Genotypes:

FYPO:0004103 - viable spherical vegetative cell

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Genotypes:

FYPO:0002380 - viable spheroid vegetative cell

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Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

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Genotypes:

Protein features

PBO:0111845 - GCK subfamily

Qualitative gene expression

PomGeneEx:0000023 - protein level constant

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PomGeneEx:0000011 - RNA level increased

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Quantitative gene expression

PBO:0006310 - protein level

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PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0001972 - abnormal cell separation after cytokinesis resulting in septated cell

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Genotypes:

FYPO:0001418 - abnormal microtubule cytoskeleton morphology during vegetative growth

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Genotypes:

FYPO:0000444 - abnormal mitotic cell cycle arrest with replicated DNA

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Genotypes:

FYPO:0003000 - abolished actin filament polymerization

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Genotypes:

FYPO:0003020 - abolished protein autophosphorylation during vegetative growth

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Genotypes:

FYPO:0006116 - abolished protein localization to actin cortical patch

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Genotypes:

FYPO:0002561 - abolished protein localization to actomyosin contractile ring

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Genotypes:

FYPO:0003329 - abolished protein localization to cell tip during mitotic interphase

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Genotypes:

FYPO:0002859 - abolished protein localization to non-growing cell tip

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Genotypes:

FYPO:0002033 - abolished protein phosphorylation during vegetative growth

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Genotypes:

FYPO:0000705 - abolished protein-protein interaction

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Genotypes:

FYPO:0004562 - binucleate aseptate vegetative cell

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Genotypes:

FYPO:0003171 - binucleate monoseptate cell with mitotic cell cycle arrest before cell separation

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Genotypes:

FYPO:0003327 - curved interphase microtubules

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Genotypes:

FYPO:0001382 - decreased protein kinase activity

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Genotypes:

FYPO:0002557 - decreased protein localization to medial cortex during vegetative growth

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Genotypes:

FYPO:0001838 - decreased protein phosphorylation during vegetative growth

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Genotypes:

FYPO:0001645 - decreased protein-protein interaction

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002021 - dispersed actin cortical patch localization during vegetative growth

References:

Genotypes:

FYPO:0001122 - elongated vegetative cell

References:

Genotypes:

FYPO:0005543 - increased duration of actomyosin contractile ring contraction

References:

Genotypes:

FYPO:0000650 - increased septation index

References:

Genotypes:

FYPO:0002302 - inviable after spore germination, multiple cell divisions, spheroid cell

References:

Genotypes:

FYPO:0001493 - inviable elongated multinucleate vegetative cell

References:

Genotypes:

FYPO:0002193 - inviable normal volume septated spheroid vegetative cell

References:

Genotypes:

FYPO:0002187 - inviable normal volume spheroid vegetative cell

References:

Genotypes:

FYPO:0006262 - inviable stubby binucleate vegetative cell

References:

Genotypes:

FYPO:0003989 - inviable stubby mononucleate vegetative cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0002401 - microtubule bundles present in increased numbers

References:

Genotypes:

FYPO:0003328 - misoriented interphase microtubules

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Genotypes:

FYPO:0003326 - normal interphase microtubule nucleation

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Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

References:

Genotypes:

FYPO:0000744 - normal protein localization to actin cortical patch

References:

Genotypes:

FYPO:0002442 - normal protein localization to cell division site

References:

Genotypes:

FYPO:0003330 - normal protein localization to new mitotic spindle pole body

References:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

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Genotypes:

FYPO:0001315 - normal vegetative cell morphology

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0001120 - pear-shaped vegetative cell

References:

Genotypes:

FYPO:0002526 - sensitive to latrunculin B

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0000129 - spherical vegetative cell

References:

Genotypes:

FYPO:0000021 - spheroid vegetative cell

References:

Genotypes:

FYPO:0000024 - stubby vegetative cell

References:

Genotypes:

FYPO:0001492 - viable elongated vegetative cell

References:

Genotypes:

FYPO:0004103 - viable spherical vegetative cell

References:

Genotypes:

FYPO:0002380 - viable spheroid vegetative cell

References:

Genotypes:

FYPO:0001491 - viable vegetative cell

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

FYPO:0002104 - viable vegetative cell with normal cell shape

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

Protein features

IDNameInterPro nameDB name
PF00069PkinaseProt_kinase_domPFAM
PS00108PROTEIN_KINASE_STSer/Thr_kinase_ASPROSITE_PATTERNS
PS00107PROTEIN_KINASE_ATPProtein_kinase_ATP_BSPROSITE_PATTERNS
PS50011PROTEIN_KINASE_DOMProt_kinase_domPROSITE_PROFILES
SM00220serkin_6Prot_kinase_domSMART
G3DSA:1.10.510.10:FF:000499FUNFAM
G3DSA:3.30.200.20:FF:000817FUNFAM
SSF56112Protein kinase-like (PK-like)Kinase-like_dom_sfSUPERFAMILY
G3DSA:1.10.510.10Transferase(Phosphotransferase) domain 1GENE3D
G3DSA:3.30.200.20Phosphorylase Kinase; domain 1GENE3D
PTHR48012STERILE20-LIKE KINASE, ISOFORM B-RELATEDSTE20/SPS1-PAKPANTHER
mobidb-lite-Disorderdisorder_predictionMOBIDB-Disorder
mobidb-lite-Low-complexitydisorder_predictionMOBIDB-Low-complexity
mobidb-lite-Negative-Polyelectrolytedisorder_predictionMOBIDB-Negative-Polyelectrolyte
mobidb-lite-Polardisorder_predictionMOBIDB-Polar

Orthologs

References / Literature

PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:38442865 - The fission yeast NDR kinase Orb6 and its signalling pathway MOR regulate cytoplasmic microtubule organization during the cell cycle.
Kume K et al. Open Biol 2024 Mar;14(3):230440
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:17317928 - A method for Pmo25-associated kinase assay in fission yeast: the activity is dependent on two gC kinases Nak1 and Sid1.
Kume K et al. Biosci Biotechnol Biochem 2007 Feb;71(2):615-7
PMID:12427731 - Nak1, an essential germinal center (GC) kinase regulates cell morphology and growth in Schizosaccharomyces pombe.
Huang TY et al. J Biol Chem 2003 Jan 10;278(2):991-7
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:29996109 - Quantitative Phosphoproteomics Reveals the Signaling Dynamics of Cell-Cycle Kinases in the Fission Yeast Schizosaccharomyces pombe.
Swaffer MP et al. Cell Rep 2018 Jul 10;24(2):503-514
PMID:15731009 - Ste20/GCK kinase Nak1/Orb3 polarizes the actin cytoskeleton in fission yeast during the cell cycle.
Leonhard K et al. J Cell Sci 2005 Mar 01;118(Pt 5):1033-44
PMID:20826805 - Fission yeast germinal center (GC) kinase Ppk11 interacts with Pmo25 and plays an auxiliary role in concert with the morphogenesis Orb6 network (MOR) in cell morphogenesis.
Goshima T et al. J Biol Chem 2010 Nov 05;285(45):35196-205
PMID:20805322 - The mitosis-to-interphase transition is coordinated by cross talk between the SIN and MOR pathways in Schizosaccharomyces pombe.
Ray S et al. J Cell Biol 2010 Sep 06;190(5):793-805
PMID:19547744 - Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species.
Beltrao P et al. PLoS Biol 2009 Jun 16;7(6):e1000134
PMID:8187760 - Genetic analysis of cell morphogenesis in fission yeast--a role for casein kinase II in the establishment of polarized growth.
Snell V et al. EMBO J 1994 May 01;13(9):2066-74
PMID:33823663 - A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans.
Halova L et al. Open Biol 2021 Apr;11(4):200405
PMID:24972934 - Cross talk between NDR kinase pathways coordinates cytokinesis with cell separation in Schizosaccharomyces pombe.
Gupta S et al. Eukaryot Cell 2014 Aug;13(8):1104-12
PMID:19808887 - Ste20-kinase-dependent TEDS-site phosphorylation modulates the dynamic localisation and endocytic function of the fission yeast class I myosin, Myo1.
Attanapola SL et al. J Cell Sci 2009 Nov 01;122(Pt 21):3856-61
PMID:39476757 - Characterization of Ksg1 protein kinase-dependent phosphoproteome in the fission yeast S. pombe.
Cipak L et al. Biochem Biophys Res Commun 2024 Oct 25;736:150895
PMID:15821139 - Systematic deletion analysis of fission yeast protein kinases.
Bimbó A et al. Eukaryot Cell 2005 Apr;4(4):799-813
PMID:23615447 - Compartmentalized nodes control mitotic entry signaling in fission yeast.
Deng L et al. Mol Biol Cell 2013 Jun;24(12):1872-81
PMID:15615784 - Nak1 interacts with Hob1 and Wsp1 to regulate cell growth and polarity in Schizosaccharomyces pombe.
Huang TY et al. J Cell Sci 2005 Jan 01;118(Pt 1):199-210
GO_REF:0000051 - S. pombe keyword mapping
PMID:16096637 - Fission yeast MO25 protein is localized at SPB and septum and is essential for cell morphogenesis.
Kanai M et al. EMBO J 2005 Sep 07;24(17):3012-25
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:21712547 - Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast.
Koch A et al. Sci Signal 2011 Jun 28;4(179):rs6
PMID:19646873 - The conserved NDR kinase Orb6 controls polarized cell growth by spatial regulation of the small GTPase Cdc42.
Das M et al. Curr Biol 2009 Aug 11;19(15):1314-9
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:26771498 - A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.
Vo TV et al. Cell 2016 Jan 14;164(1-2):310-323
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:23462181 - Crosstalk between casein kinase II and Ste20-related kinase Nak1.
Cipak L et al. Cell Cycle 2013 Mar 15;12(6):884-8
PMID:39705284 - Proteomic and phosphoproteomic analyses reveal that TORC1 is reactivated by pheromone signaling during sexual reproduction in fission yeast.
Bérard M et al. PLoS Biol 2024 Dec 20;22(12):e3002963
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:23649273 - Fission yeast leucine-rich repeat protein Lrp1 is essential for cell morphogenesis as a component of the morphogenesis Orb6 network (MOR).
Kume K et al. Biosci Biotechnol Biochem 2013;77(5):1086-91
PMID:8522609 - Fission yeast cell morphogenesis: identification of new genes and analysis of their role during the cell cycle.
Verde F et al. J Cell Biol 1995 Dec;131(6 Pt 1):1529-38
PMID:23394829 - Identification of SIN pathway targets reveals mechanisms of crosstalk between NDR kinase pathways.
Gupta S et al. Curr Biol 2013 Feb 18;23(4):333-8
PMID:27474797 - Spatial control of translation repression and polarized growth by conserved NDR kinase Orb6 and RNA-binding protein Sts5.
Nuñez I et al. Elife 2016 Jul 30;5
PMID:22629372 - Conserved Orb6 phosphorylation sites are essential for polarized cell growth in Schizosaccharomyces pombe.
Liu G et al. PLoS One 2012;7(5):e37221
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:27298342 - Identification of S-phase DNA damage-response targets in fission yeast reveals conservation of damage-response networks.
Willis NA et al. Proc Natl Acad Sci U S A 2016 Jun 28;113(26):E3676-85
PMID:34523683 - Cdc42 reactivation at growth sites is regulated by local cell-cycle-dependent loss of its GTPase-activating protein Rga4 in fission yeast.
Rich-Robinson J et al. J Cell Sci 2021 Oct 01;134(19)
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7