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protein coding gene - rpb1 (SPBC28F2.12) - DNA-directed RNA polymerase II complex large subunit Rpb1

Gene summary

Standard name
rpb1
Systematic ID
SPBC28F2.12
Product
DNA-directed RNA polymerase II complex large subunit Rpb1
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
P36594
ORFeome ID
41/41B01
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 1591140..1596744 forward strand

Annotation

PBO:0000445 - 2.7.7.6

Disease association

MONDO:0005071 - nervous system disorder

References:

MONDO:0032829 - neurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalities

References:

GO biological process

GO:0006370 - 7-methylguanosine mRNA capping

References:

GO:0180034 - co-transcriptional lncRNA 3' end processing, cleavage and polyadenylation pathway

References:

GO:0030643 - intracellular phosphate ion homeostasis

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GO:0042789 - mRNA transcription by RNA polymerase II

References:

GO:0006369 - termination of RNA polymerase II transcription

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GO:0006368 - transcription elongation by RNA polymerase II

References:

GO:0006367 - transcription initiation at RNA polymerase II promoter

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GO cellular component

GO:0000785 - chromatin

References:

GO:0005634 - nucleus

References:

GO:0005665 - RNA polymerase II, core complex

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GO:0016591 - RNA polymerase II, holoenzyme

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GO molecular function

GO:0140463 - chromatin-protein adaptor activity

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GO:0003677 - DNA binding

References:

GO:0003899 - DNA-directed RNA polymerase activity

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GO:0005515 - protein binding

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

MOD:00047 - O-phospho-L-threonine

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MOD:00048 - O4'-phospho-L-tyrosine

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MOD:00696 - phosphorylated residue

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MOD:01149 - sumoylated lysine

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MOD:01148 - ubiquitinylated lysine

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Multi-locus phenotype

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0004745 - abolished histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0001045 - decreased acid phosphatase activity

References:

Genotypes:

FYPO:0006658 - decreased acid phosphatase activity during cellular response to phosphate starvation

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

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Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

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Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

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Genotypes:

FYPO:0000708 - decreased mating efficiency

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Genotypes:

FYPO:0000826 - decreased RNA level

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Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0007786 - elongated cell with cell cycle arrest at meiotic G2/MI transition

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Genotypes:

FYPO:0002243 - increased acid phosphatase activity

References:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

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Genotypes:

FYPO:0006077 - increased histone H3-K9 methylation at rDNA during vegetative growth

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

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Genotypes:

FYPO:0000836 - increased protein level

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Genotypes:

FYPO:0004032 - increased protein localization to chromatin at rDNA

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Genotypes:

FYPO:0001489 - inviable vegetative cell

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0001387 - loss of viability at high temperature

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Genotypes:

FYPO:0003903 - loss of viability at low temperature

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Genotypes:

FYPO:0003267 - normal acid phosphatase activity

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Genotypes:

FYPO:0000047 - normal cell population growth

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Genotypes:

FYPO:0001037 - normal growth during cellular response to salt stress

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Genotypes:

FYPO:0000962 - normal growth on hydrogen peroxide

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Genotypes:

FYPO:0000964 - normal growth on thiabendazole

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Genotypes:

FYPO:0002085 - normal vegetative cell growth

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Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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Genotypes:

FYPO:0003840 - sensitive to carbendazim

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Genotypes:

FYPO:0002167 - sensitive to ethyl methanesulfonate

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Genotypes:

FYPO:0000107 - sensitive to latrunculin A

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Genotypes:

FYPO:0000091 - sensitive to thiabendazole

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Genotypes:

FYPO:0001234 - slow vegetative cell population growth

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Genotypes:

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

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PomGeneEx:0000020 - protein level unchanged

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PomGeneEx:0000021 - protein present

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PomGeneEx:0000027 - ribosomal density decreased

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PomGeneEx:0000013 - RNA level unchanged

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Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0007411 - abnormal distribution of RNA polymerase II C-terminal domain residue phosphorylation during vegetative growth

References:

Genotypes:

FYPO:0007409 - abnormal mRNA alternative polyadenylation

References:

Genotypes:

FYPO:0007408 - abnormal protein localization to chromatin at polyadenylation site

References:

Genotypes:

FYPO:0002033 - abolished protein phosphorylation during vegetative growth

References:

Genotypes:

FYPO:0001326 - altered RNA level during vegetative growth

References:

Genotypes:

FYPO:0001045 - decreased acid phosphatase activity

References:

Genotypes:

FYPO:0006658 - decreased acid phosphatase activity during cellular response to phosphate starvation

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

References:

Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

References:

Genotypes:

FYPO:0005050 - decreased chromatin binding during cellular response to nitrogen starvation

References:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0000303 - decreased conjugation frequency

References:

Genotypes:

FYPO:0000878 - decreased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0004461 - decreased level of regulation of sexual differentiation gene mRNA during nitrogen starvation

References:

Genotypes:

FYPO:0000708 - decreased mating efficiency

References:

Genotypes:

FYPO:0005167 - decreased protein localization to chromatin at centromere inner repeat

References:

Genotypes:

FYPO:0006818 - decreased protein localization to chromatin at centromere outer repeat

References:

Genotypes:

FYPO:0002391 - decreased protein localization to chromatin at rDNA

References:

Genotypes:

FYPO:0005049 - decreased protein localization to chromatin at RNA polymerase II promoter during nitrogen starvation

References:

Genotypes:

FYPO:0005047 - decreased protein localization to chromatin at RNA polymerase II promoter during vegetative growth

References:

Genotypes:

FYPO:0008028 - decreased rate of acid phosphatase activation during phosphate starvation

References:

Genotypes:

FYPO:0008037 - decreased rate of transcription elongation from RNA polymerase II promoter

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Genotypes:

FYPO:0000826 - decreased RNA level

References:

Genotypes:

FYPO:0001152 - decreased RNA level during nitrogen starvation

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Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

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Genotypes:

FYPO:0000584 - decreased sporulation frequency

References:

Genotypes:

FYPO:0002243 - increased acid phosphatase activity

References:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

References:

Genotypes:

FYPO:0001386 - increased haploidization

References:

Genotypes:

FYPO:0007407 - increased level of phosphate starvation gene mRNA during vegetative growth

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0001974 - increased number of cells with 1C DNA content

References:

Genotypes:

FYPO:0004066 - increased protein localization to chromatin at protein coding gene

References:

Genotypes:

FYPO:0005048 - increased protein localization to chromatin at RNA polymerase II promoter during vegetative growth

References:

Genotypes:

FYPO:0001890 - increased RNA level

References:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

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Genotypes:

FYPO:0006614 - increased termination of RNA polymerase II transcription

References:

Genotypes:

FYPO:0000311 - inviable after spore germination with normal, unseptated germ tube morphology

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Genotypes:

FYPO:0002430 - inviable after spore germination, multiple cell divisions

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Genotypes:

FYPO:0002280 - inviable after spore germination, single cell division

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Genotypes:

FYPO:0001991 - inviable after spore germination, without cell division

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Genotypes:

FYPO:0002151 - inviable spore

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Genotypes:

FYPO:0002150 - inviable spore population

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0003903 - loss of viability at low temperature

References:

Genotypes:

FYPO:0003267 - normal acid phosphatase activity

References:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

References:

Genotypes:

FYPO:0002141 - normal cell population growth at low temperature

References:

Genotypes:

FYPO:0001037 - normal growth during cellular response to salt stress

References:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

References:

Genotypes:

FYPO:0000962 - normal growth on hydrogen peroxide

References:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

References:

Genotypes:

FYPO:0005866 - normal histone H3-K9 methylation at rDNA during vegetative growth

References:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

References:

Genotypes:

FYPO:0007671 - normal transcription scaling

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0000084 - sensitive to 6-azauracil

References:

Genotypes:

FYPO:0003840 - sensitive to carbendazim

References:

Genotypes:

FYPO:0000107 - sensitive to latrunculin A

References:

Genotypes:

FYPO:0003670 - sensitive to mycophenolic acid

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF04992RNA_pol_Rpb1_6RNA_pol_Rpb1_6PFAM
PF04983RNA_pol_Rpb1_3RNA_pol_Rpb1_3PFAM
PF05001RNA_pol_Rpb1_RRNA_pol_II_repeat_eukPFAM
PF04990RNA_pol_Rpb1_7RNA_pol_Rpb1_7PFAM
PF05000RNA_pol_Rpb1_4RNA_pol_Rpb1_4PFAM
PF04997RNA_pol_Rpb1_1RNA_pol_Rpb1_1PFAM
PF00623RNA_pol_Rpb1_2RNA_pol_asuPFAM
PF04998RNA_pol_Rpb1_5RNA_pol_Rpb1_5PFAM
cd02584RNAP_II_Rpb1_CCDD
cd02733RNAP_II_RPB1_NCDD
PS00115RNA_POL_II_REPEATRNA_pol_II_repeat_eukPROSITE_PATTERNS
SM00663rpolaneu7RNA_pol_NSMART
G3DSA:3.30.1360.140:FF:000001FUNFAM
G3DSA:4.10.860.120:FF:000003FUNFAM
G3DSA:1.10.132.30:FF:000001FUNFAM
G3DSA:3.30.1490.180:FF:000001FUNFAM
G3DSA:2.40.40.20:FF:000019FUNFAM
G3DSA:1.10.274.100:FF:000001FUNFAM
G3DSA:1.10.150.390:FF:000001FUNFAM
G3DSA:4.10.860.120:FF:000002FUNFAM
SSF64484beta and beta-prime subunits of DNA dependent RNA-polymeraseSUPERFAMILY
G3DSA:6.10.250.2940GENE3D
G3DSA:3.30.1360.140RNA_pol_Rpb1_7_sfGENE3D
G3DSA:4.10.860.120RNA polymerase II, clamp domainRNA_pol_Rpb1_clamp_domainGENE3D
G3DSA:3.30.1490.180RNA polymerase iiGENE3D
G3DSA:1.10.132.30Rpb1_funnel_sfGENE3D
G3DSA:6.20.50.80GENE3D
G3DSA:1.10.274.100RNA polymerase Rpb1, domain 3RNA_pol_Rpb1_3_sfGENE3D
G3DSA:1.10.150.390GENE3D
G3DSA:2.40.40.20GENE3D
PTHR19376DNA-DIRECTED RNA POLYMERASEDNA-dir_RpoC_beta_primePANTHER
CoilCoilCOILS
mobidb-lite-Disorderdisorder_predictionMOBIDB-Disorder
NF006336PRK08566.1NCBIFAM

Orthologs

References / Literature

PMID:11839823 - Formation of a carboxy-terminal domain phosphatase (Fcp1)/TFIIF/RNA polymerase II (pol II) complex in Schizosaccharomyces pombe involves direct interaction between Fcp1 and the Rpb4 subunit of pol II.
Kimura M et al. Mol Cell Biol 2002 Mar;22(5):1577-88
PMID:11572939 - Analysis of Schizosaccharomyces pombe mediator reveals a set of essential subunits conserved between yeast and metazoan cells.
Spåhr H et al. Proc Natl Acad Sci U S A 2001 Oct 09;98(21):11985-90
PMID:26412298 - A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.
Beckley JR et al. Mol Cell Proteomics 2015 Dec;14(12):3132-41
PMID:33771877 - RNA polymerase backtracking results in the accumulation of fission yeast condensin at active genes.
Rivosecchi J et al. Life Sci Alliance 2021 Jun;4(6)
PMID:9645434 - Alteration of the largest subunit of RNA polymerase II and its effect on chromosome stability in Schizosaccharomyces pombe.
Sugaya K et al. Mol Gen Genet 1998 May;258(3):279-87
PMID:26537787 - Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast.
Køhler JB et al. Nat Commun 2015 Nov 05;6:8827
PMID:15620689 - Glyceraldehyde-3-phosphate dehydrogenase and actin associate with RNA polymerase II and interact with its Rpb7 subunit.
Mitsuzawa H et al. FEBS Lett 2005 Jan 03;579(1):48-52
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:15798214 - A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation.
Kizer KO et al. Mol Cell Biol 2005 Apr;25(8):3305-16
PMID:19458260 - Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution.
Spåhr H et al. Proc Natl Acad Sci U S A 2009 Jun 09;106(23):9185-90
PMID:20231361 - Separable functions of the fission yeast Spt5 carboxyl-terminal domain (CTD) in capping enzyme binding and transcription elongation overlap with those of the RNA polymerase II CTD.
Schneider S et al. Mol Cell Biol 2010 May;30(10):2353-64
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:8557037 - Identification of a cdk-activating kinase in fission yeast.
Buck V et al. EMBO J 1995 Dec 15;14(24):6173-83
PMID:26792892 - Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast.
Suzuki S et al. Nucleic Acids Res 2016 May 19;44(9):4147-62
PMID:16428435 - Cyclin-dependent kinase 9 (Cdk9) of fission yeast is activated by the CDK-activating kinase Csk1, overlaps functionally with the TFIIH-associated kinase Mcs6, and associates with the mRNA cap methyltransferase Pcm1 in vivo.
Pei Y et al. Mol Cell Biol 2006 Feb;26(3):777-88
PMID:34389684 - Genetic screen for suppression of transcriptional interference identifies a gain-of-function mutation in Pol2 termination factor Seb1.
Schwer B et al. Proc Natl Acad Sci U S A 2021 Aug 17;118(33)
PMID:33711009 - Structure-function analysis of fission yeast cleavage and polyadenylation factor (CPF) subunit Ppn1 and its interactions with Dis2 and Swd22.
Benjamin B et al. PLoS Genet 2021 Mar;17(3):e1009452
PMID:30355493 - Expanded Interactome of the Intrinsically Disordered Protein Dss1.
Schenstrøm SM et al. Cell Rep 2018 Oct 23;25(4):862-870
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:15743411 - Studies of Schizosaccharomyces pombe TFIIE indicate conformational and functional changes in RNA polymerase II at transcription initiation.
Hayashi K et al. Genes Cells 2005 Mar;10(3):207-24
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:17502918 - A cyclin-dependent kinase that promotes cytokinesis through modulating phosphorylation of the carboxy terminal domain of the RNA Pol II Rpb1p sub-unit.
Karagiannis J et al. PLoS One 2007 May 09;2(5):e433
PMID:25375137 - Systematic analysis of the role of RNA-binding proteins in the regulation of RNA stability.
Hasan A et al. PLoS Genet 2014 Nov;10(11):e1004684
PMID:9738888 - Mapping of Rpb3 and Rpb5 contact sites on two large subunits, Rpb1 and Rpb2, of the RNA polymerase II from fission yeast.
Miyao T et al. Mol Gen Genet 1998 Jul;259(1):123-9
PMID:17512405 - RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing.
Bühler M et al. Cell 2007 May 18;129(4):707-21
PMID:17339332 - Rct1, a nuclear RNA recognition motif-containing cyclophilin, regulates phosphorylation of the RNA polymerase II C-terminal domain.
Gullerova M et al. Mol Cell Biol 2007 May;27(10):3601-11
PMID:12738880 - TRAP230/ARC240 and TRAP240/ARC250 Mediator subunits are functionally conserved through evolution.
Samuelsen CO et al. Proc Natl Acad Sci U S A 2003 May 27;100(11):6422-7
PMID:26443059 - Sgf73, a subunit of SAGA complex, is required for the assembly of RITS complex in fission yeast.
Deng X et al. Sci Rep 2015 Oct 07;5:14707
PMID:26264592 - RNA polymerase II CTD phospho-sites Ser5 and Ser7 govern phosphate homeostasis in fission yeast.
Schwer B et al. RNA 2015 Oct;21(10):1770-80
PMID:17434129 - S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription.
Lan F et al. Mol Cell 2007 Apr 13;26(1):89-101
PMID:31269446 - CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.
Vo TV et al. Cell Rep 2019 Jul 02;28(1):267-281.e5
PMID:32101745 - Dense Transposon Integration Reveals Essential Cleavage and Polyadenylation Factors Promote Heterochromatin Formation.
Lee SY et al. Cell Rep 2020 Feb 25;30(8):2686-2698.e8
PMID:28241144 - Mediator structure and rearrangements required for holoenzyme formation.
Tsai KL et al. Nature 2017 Apr 13;544(7649):196-201
PMID:16087749 - Histone H3 K36 methylation is associated with transcription elongation in Schizosaccharomyces pombe.
Morris SA et al. Eukaryot Cell 2005 Aug;4(8):1446-54
PMID:33313903 - Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.
Rubio A et al. Nucleic Acids Res 2021 Jan 11;49(1):383-399
PMID:10648788 - Involvement of multiple subunit-subunit contacts in the assembly of RNA polymerase II.
Kimura M et al. Nucleic Acids Res 2000 Feb 15;28(4):952-9
PMID:21725325 - Coordination of DNA replication and histone modification by the Rik1-Dos2 complex.
Li F et al. Nature 2011 Jul 03;475(7355):244-8
PMID:22540037 - Predicting the fission yeast protein interaction network.
Pancaldi V et al. G3 (Bethesda) 2012 Apr;2(4):453-67
PMID:30282034 - Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination.
Kecman T et al. Cell Rep 2018 Oct 02;25(1):259-269.e5
PMID:30355770 - RNA polymerase II CTD interactome with 3' processing and termination factors in fission yeast and its impact on phosphate homeostasis.
Sanchez AM et al. Proc Natl Acad Sci U S A 2018 Nov 06;115(45):E10652-E10661
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:24583182 - A novel method for purification of the endogenously expressed fission yeast Set2 complex.
Suzuki S et al. Protein Expr Purif 2014 May;97:44-9
PMID:12904290 - Characterization of the Schizosaccharomyces pombe Cdk9/Pch1 protein kinase: Spt5 phosphorylation, autophosphorylation, and mutational analysis.
Pei Y et al. J Biol Chem 2003 Oct 31;278(44):43346-56
PMID:28515143 - Cyclin C influences the timing of mitosis in fission yeast.
Banyai G et al. Mol Biol Cell 2017 Jul 01;28(13):1738-1744
PMID:11387325 - The length, phosphorylation state, and primary structure of the RNA polymerase II carboxyl-terminal domain dictate interactions with mRNA capping enzymes.
Pei Y et al. J Biol Chem 2001 Jul 27;276(30):28075-82
PMID:12475973 - Interactions between fission yeast Cdk9, its cyclin partner Pch1, and mRNA capping enzyme Pct1 suggest an elongation checkpoint for mRNA quality control.
Pei Y et al. J Biol Chem 2003 Feb 28;278(9):7180-8
PMID:21340088 - Microarray-based target identification using drug hypersensitive fission yeast expressing ORFeome.
Arita Y et al. Mol Biosyst 2011 May;7(5):1463-72
PMID:26219431 - Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a noncanonical CTD-interacting domain fold.
Mühlbacher W et al. Proteins 2015 Oct;83(10):1849-58
PMID:32059768 - Size-Dependent Increase in RNA Polymerase II Initiation Rates Mediates Gene Expression Scaling with Cell Size.
Sun XM et al. Curr Biol 2020 Apr 06;30(7):1217-1230.e7
PMID:9077438 - Molecular assembly of RNA polymerase II from the fission yeast Schizosaccharomyces pombe: subunit-subunit contact network involving Rpb5.
Miyao T et al. Genes Cells 1996 Sep;1(9):843-54
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:18257517 - Phosphoproteome analysis of fission yeast.
Wilson-Grady JT et al. J Proteome Res 2008 Mar;7(3):1088-97
PMID:21931816 - Global gene expression analysis of fission yeast mutants impaired in Ser-2 phosphorylation of the RNA pol II carboxy terminal domain.
Saberianfar R et al. PLoS One 2011;6(9):e24694
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:28218250 - Chromatin remodeller Fun30 Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.
Lee J et al. Nat Commun 2017 Feb 20;8:14527
PMID:9325316 - RNA polymerase II subunits 2, 3, and 11 form a core subassembly with DNA binding activity.
Kimura M et al. J Biol Chem 1997 Oct 10;272(41):25851-5
PMID:28366642 - Spt5 Plays Vital Roles in the Control of Sense and Antisense Transcription Elongation.
Shetty A et al. Mol Cell 2017 Apr 06;66(1):77-88.e5
PMID:11168400 - Intracellular contents and assembly states of all 12 subunits of the RNA polymerase II in the fission yeast Schizosaccharomyces pombe.
Kimura M et al. Eur J Biochem 2001 Feb;268(3):612-9
PMID:29237752 - Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi.
Kajitani T et al. Proc Natl Acad Sci U S A 2017 Dec 26;114(52):E11208-E11217
PMID:10625684 - Purification and characterization of RNA polymerase II holoenzyme from Schizosaccharomyces pombe.
Spåhr H et al. J Biol Chem 2000 Jan 14;275(2):1351-6
PMID:31276588 - Inositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3' processing and transcription termination.
Sanchez AM et al. Nucleic Acids Res 2019 Sep 19;47(16):8452-8469
PMID:32496538 - Cdk9 and H2Bub1 signal to Clr6-CII/Rpd3S to suppress aberrant antisense transcription.
Sansó M et al. Nucleic Acids Res 2020 Jul 27;48(13):7154-7168
PMID:24939935 - How an mRNA capping enzyme reads distinct RNA polymerase II and Spt5 CTD phosphorylation codes.
Doamekpor SK et al. Genes Dev 2014 Jun 15;28(12):1323-36
PMID:19026779 - The structure of Fcp1, an essential RNA polymerase II CTD phosphatase.
Ghosh A et al. Mol Cell 2008 Nov 21;32(4):478-90
PMID:32062975 - Phosphoproteomics Reveals Novel Targets and Phosphoprotein Networks in Cell Cycle Mediated by Dsk1 Kinase.
Wu M et al. J Proteome Res 2020 Apr 03;19(4):1776-1787
PMID:19547744 - Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species.
Beltrao P et al. PLoS Biol 2009 Jun 16;7(6):e1000134
PMID:28367989 - The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA.
Wittmann S et al. Nat Commun 2017 Apr 03;8:14861
PMID:35012333 - Cleavage-Polyadenylation Factor Cft1 and SPX Domain Proteins Are Agents of Inositol Pyrophosphate Toxicosis in Fission Yeast.
Schwer B et al. mBio 2022 Feb 22;13(1):e0347621
PMID:38899862 - Suppression of inositol pyrophosphate toxicosis and hyper-repression of the fission yeast PHO regulon by loss-of-function mutations in chromatin remodelers Snf22 and Sol1.
Schwer B et al. mBio 2024 Jun 20;:e0125224
PMID:24013502 - Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries.
Wang J et al. Genes Dev 2013 Sep 01;27(17):1886-902
PMID:11893740 - Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5.
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