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protein coding gene - ade1 (SPBC405.01) - phosphoribosylamine-glycine ligase/phosphoribosylformylglycinamidine cyclo-ligase

Gene summary

Standard name
ade1
Systematic ID
SPBC405.01
Product
phosphoribosylamine-glycine ligase/phosphoribosylformylglycinamidine cyclo-ligase
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
min4, SPBC4C3.02c
UniProt ID
P20772
ORFeome ID
33/33G10
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 3140582..3143304 forward strand

Annotation

PBO:0004378 - 6.3.3.1

PBO:0004379 - 6.3.4.13

GO biological process

GO:0006189 - 'de novo' IMP biosynthetic process

References:

GO:0046084 - adenine biosynthetic process

References:

GO:0009113 - purine nucleobase biosynthetic process

References:

GO cellular component

GO:0005829 - cytosol

References:

GO molecular function

GO:0005524 - ATP binding

References:

GO:0046872 - metal ion binding

References:

GO:0004637 - phosphoribosylamine-glycine ligase activity

References:

GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

MOD:00047 - O-phospho-L-threonine

References:

MOD:01148 - ubiquitinylated lysine

References:

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

References:

PomGeneEx:0000027 - ribosomal density decreased

References:

PomGeneEx:0000012 - RNA level decreased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0001817 - abolished phosphoribosylamine-glycine ligase activity

References:

Genotypes:

FYPO:0001819 - abolished phosphoribosylformylglycinamidine cyclo-ligase activity

References:

Genotypes:

FYPO:0000747 - growth auxotrophic for adenine

References:

Genotypes:

FYPO:0002243 - increased acid phosphatase activity

References:

Genotypes:

FYPO:0000741 - increased cellular pigment accumulation

References:

Genotypes:

FYPO:0001242 - increased RNA level during cellular response to adenine starvation

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF01071GARS_APRibGlycinamid_synth_ATP-graspPFAM
PF02769AIRS_CPurM-like_C_domPFAM
PF00586AIRSPurM-like_NPFAM
PF02843GARS_CPRibGlycinamide_synth_C-domPFAM
PF02844GARS_NPRibGlycinamide_synth_NPFAM
cd02196PurMPurM_cligaseCDD
PS00184GARSPRibGlycinamide_synth_CSPROSITE_PATTERNS
PS50975ATP_GRASPATP-graspPROSITE_PROFILES
SM01210GARS_C_2PRibGlycinamide_synth_C-domSMART
SM01209GARS_A_3SMART
G3DSA:3.90.600.10:FF:000001FUNFAM
G3DSA:3.30.470.20:FF:000018FUNFAM
G3DSA:3.30.1330.10:FF:000001FUNFAM
G3DSA:3.30.1490.20:FF:000006FUNFAM
G3DSA:3.90.650.10:FF:000007FUNFAM
G3DSA:3.40.50.20:FF:000006FUNFAM
SSF55326PurM N-terminal domain-likePurM-like_N_sfSUPERFAMILY
SSF56042PurM C-terminal domain-likePurM-like_C_sfSUPERFAMILY
SSF56059Glutathione synthetase ATP-binding domain-likeSUPERFAMILY
SSF52440PreATP-grasp domainPreATP-grasp_dom_sfSUPERFAMILY
SSF51246Rudiment single hybrid motifRudment_hybrid_motifSUPERFAMILY
G3DSA:3.30.1330.10PurM-like_N_sfGENE3D
G3DSA:3.40.50.20GENE3D
G3DSA:3.30.1490.20ATP_grasp_subdomain_1GENE3D
G3DSA:3.30.470.20GENE3D
G3DSA:3.90.600.10PRibGlycinamide_synth_C_sfGENE3D
G3DSA:3.90.650.10PurM-like_C_sfGENE3D
PTHR10520TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATEDPurM_cligasePANTHER
MF_00138GARSPRibGlycinamide_synthHAMAP
MF_00741AIRSPurM_cligaseHAMAP
TIGR00878purMPurM_cligaseNCBIFAM
TIGR00877purDPRibGlycinamide_synthNCBIFAM

Orthologs

References / Literature

PMID:499806 - Allelism of methionine-sensitive mutants of Schizosaccharomyces pombe to loci involved in adenine biosynthesis.
Strauss A Genet Res 1979 Jun;33(3):261-8
PMID:39705284 - Proteomic and phosphoproteomic analyses reveal that TORC1 is reactivated by pheromone signaling during sexual reproduction in fission yeast.
Bérard M et al. PLoS Biol 2024 Dec 20;22(12):e3002963
GO_REF:0000002 - Comments
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:37970674 - SUMOylation regulates Lem2 function in centromere clustering and silencing.
Strachan J et al. J Cell Sci 2023 Dec 01;136(23)
PMID:5139537 - Study of adenine aminohydrolase in the yeast, Schizosaccharomyces pombe.
Abbondandolo A et al. J Bacteriol 1971 Dec;108(3):959-63
PMID:14008 - Study of the role of puring phosphoribosyltransferases in the uptake of adenine and guanine by Schizosaccharomyces pombe cells.
Housset P et al. Eur J Biochem 1977 Feb 15;73(1):99-105
PMID:26412298 - A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.
Beckley JR et al. Mol Cell Proteomics 2015 Dec;14(12):3132-41
PMID:1394510 - Regulation of pho1-encoded acid phosphatase of Schizosaccharomyces pombe by adenine and phosphate.
Schweingruber ME et al. Curr Genet 1992 Oct;22(4):289-92
PMID:31206516 - Regulation of ectopic heterochromatin-mediated epigenetic diversification by the JmjC family protein Epe1.
Sorida M et al. PLoS Genet 2019 Jun;15(6):e1008129
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:17248775 - Genetic Mapping in SCHIZOSACCHAROMYCES POMBE by Mitotic and Meiotic Analysis and Induced Haploidization.
Kohli J et al. Genetics 1977 Nov;87(3):471-89
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:31064814 - Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast.
Larochelle M et al. J Cell Sci 2019 May 31;132(11)
PMID:7565608 - Schizosaccharomyces pombe rds1, an adenine-repressible gene regulated by glucose, ammonium, phosphate, carbon dioxide and temperature.
Ludin KM et al. Mol Gen Genet 1995 Aug 30;248(4):439-45
PMID:36478272 - Translation-complex profiling of fission yeast cells reveals dynamic rearrangements of scanning ribosomal subunits upon nutritional stress.
Duncan CDS et al. Nucleic Acids Res 2022 Dec 09;50(22):13011-13025
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:28218250 - Chromatin remodeller Fun30 Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.
Lee J et al. Nat Commun 2017 Feb 20;8:14527
PMID:20976105 - Silencing mediated by the Schizosaccharomyces pombe HIRA complex is dependent upon the Hpc2-like protein, Hip4.
Anderson HE et al. PLoS One 2010 Oct 18;5(10):e13488
PMID:19933844 - Fission yeast Iec1-ino80-mediated nucleosome eviction regulates nucleotide and phosphate metabolism.
Hogan CJ et al. Mol Cell Biol 2010 Feb;30(3):657-74
PMID:3502942 - Sequence of the bifunctional ade1 gene in the purine biosynthetic pathway of the fission yeast Schizosaccharomyces pombe.
McKenzie R et al. Curr Genet 1987;12(8):591-7
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:967158 - The product of the ade1: gene in Schizosaccharomyces pombe: a bifunctional enzyme catalysing two distinct steps in purine biosynthesis.
Fluri R et al. Mol Gen Genet 1976 Sep 23;147(3):271-82
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:33313903 - Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.
Rubio A et al. Nucleic Acids Res 2021 Jan 11;49(1):383-399