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protein coding gene - clr4 (SPBC428.08c) - histone lysine H3-K9 methyltransferase (Suv39) Clr4

Gene summary

Standard name
clr4
Systematic ID
SPBC428.08c
Product
histone lysine H3-K9 methyltransferase (Suv39) Clr4
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
O60016
ORFeome ID
23/23G02
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 453996..458410 reverse strand

Annotation

Comment

PBO:0000206 - deletion mutant expression profiling

References:

GO biological process

GO:0033562 - co-transcriptional gene silencing by RNA interference machinery

References:

GO:0031508 - pericentric heterochromatin formation

References:

GO:0030466 - silent mating-type cassette heterochromatin formation

References:

GO:1902794 - siRNA-independent facultative heterochromatin formation

References:

GO:0140727 - siRNA-mediated pericentric heterochromatin formation

References:

GO:0031509 - subtelomeric heterochromatin formation

References:

GO cellular component

GO:0043494 - CLRC complex

References:

GO:0031934 - mating-type region heterochromatin

References:

GO:0005634 - nucleus

References:

GO:0005721 - pericentric heterochromatin

References:

GO:0140720 - subtelomeric heterochromatin

References:

GO molecular function

GO:0003690 - double-stranded DNA binding

References:

GO:0140006 - histone H3 reader activity

References:

GO:0046974 - histone H3K9 methyltransferase activity

References:

GO:0140948 - histone H3K9 monomethyltransferase activity

References:

GO:0140949 - histone H3K9 trimethyltransferase activity

References:

GO:0140947 - histone H3K9me2 methyltransferase activity

References:

GO:0062072 - histone H3K9me2/3 reader activity

References:

GO:0008168 - methyltransferase activity

References:

GO:0005515 - protein binding

References:

GO:0016279 - protein-lysine N-methyltransferase activity

References:

GO:0003697 - single-stranded DNA binding

References:

GO:0003727 - single-stranded RNA binding

References:

GO:0043130 - ubiquitin binding

References:

GO:0061649 - ubiquitin-modified histone reader activity

References:

GO:0008270 - zinc ion binding

References:

Modification

MOD:00083 - N6,N6,N6-trimethyl-L-lysine

References:

MOD:00084 - N6,N6-dimethyl-L-lysine

References:

MOD:00085 - N6-methyl-L-lysine

References:

MOD:00046 - O-phospho-L-serine

References:

MOD:00696 - phosphorylated residue

References:

MOD:01149 - sumoylated lysine

References:

Multi-locus phenotype

FYPO:0008415 - abnormal centromeric outer repeat transcript localization to the cytoplasm

References:

Genotypes:

FYPO:0003044 - abnormal heterochromatin assembly

References:

Genotypes:

FYPO:0004159 - abnormal homologous chromosome segregation

References:

Genotypes:

FYPO:0005306 - abnormal protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0004746 - abolished heterochromatin assembly involved in chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0004745 - abolished histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0006813 - abolished histone H3-K9 trimethylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0005843 - abolished histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0004816 - decreased antisense RNA level

References:

Genotypes:

FYPO:0000278 - decreased cell population growth following spore germination

References:

Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

References:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

References:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0003081 - decreased genetic imprinting at mating-type locus

References:

Genotypes:

FYPO:0000877 - decreased histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0007642 - decreased histone H3-K9 dimethylation at rDNA during G0

References:

Genotypes:

FYPO:0003096 - decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0006599 - decreased protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0002391 - decreased protein localization to chromatin at rDNA

References:

Genotypes:

FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0004009 - decreased rRNA transcription

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002019 - elongated telomeres during vegetative growth

References:

Genotypes:

FYPO:0003557 - increased antisense RNA level

References:

Genotypes:

FYPO:0004689 - increased cenH-derived RNA level

References:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0006079 - increased chromatin silencing at rDNA

References:

Genotypes:

FYPO:0004542 - increased chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0007639 - increased DNA damage at rDNA during G0

References:

Genotypes:

FYPO:0005522 - increased forward centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

References:

Genotypes:

FYPO:0004761 - increased histone exchange at pericentric heterochromatin

References:

Genotypes:

FYPO:0006815 - increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0000966 - increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0006681 - increased histone H3-K9 acetylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0006814 - increased histone H3-K9 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0002960 - increased level of DSR-containing meiotic gene mRNA during vegetative growth

References:

Genotypes:

FYPO:0002354 - increased level of heterochromatin-encoded proteins

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0007227 - increased number of R-loops at centromere

References:

Genotypes:

FYPO:0005026 - increased protein localization to chromatin at chromosome arms

References:

Genotypes:

FYPO:0004032 - increased protein localization to chromatin at rDNA

References:

Genotypes:

FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0004377 - increased protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0005523 - increased reverse centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0001890 - increased RNA level

References:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

References:

Genotypes:

FYPO:0004207 - increased siRNA level

References:

Genotypes:

FYPO:0003049 - increased transcriptional readthrough

References:

Genotypes:

FYPO:0001309 - increased viability in stationary phase

References:

Genotypes:

FYPO:0000944 - inviable spore with normal morphology

References:

Genotypes:

FYPO:0001489 - inviable vegetative cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0000228 - lagging mitotic chromosomes

References:

Genotypes:

FYPO:0006518 - loss of viability in G0

References:

Genotypes:

FYPO:0006660 - loss of viability upon G0 to G1 transition

References:

Genotypes:

FYPO:0001886 - meiotic cell cycle entry and sporulation in haploid

References:

Genotypes:

FYPO:0008246 - normal cenH-derived RNA level

References:

Genotypes:

FYPO:0002567 - normal centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0002837 - normal centromeric outer repeat transcript-derived siRNA level

References:

Genotypes:

FYPO:0006992 - normal chromatin silencing at centromere otr1R

References:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0007479 - normal epigenetic heterochromatin inheritance

References:

Genotypes:

FYPO:0007035 - normal growth on 5-fluorouracil

References:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

References:

Genotypes:

FYPO:0003099 - normal heterochromatin assembly

References:

Genotypes:

FYPO:0000862 - normal histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007853 - normal protein localization to centromere

References:

Genotypes:

FYPO:0008154 - normal protein localization to centromeric heterochromatin

References:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

References:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

References:

Genotypes:

FYPO:0006368 - normal spatial extent of centromeric heterochromatin assembly

References:

Genotypes:

FYPO:0002350 - normal stress granule assembly during vegetative growth

References:

Genotypes:

FYPO:0007629 - normal viability during G0

References:

Genotypes:

FYPO:0004325 - sensitive to 5-fluorouracil

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Protein features

PBO:0111831 - chromodomain protein

PBO:0111852 - SET domain

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

References:

Quantitative gene expression

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0000156 - abnormal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0005641 - abnormal chromosome segregation during meiosis I with premature sister kinetochore separation, lagging chromosomes, and normal chromosome separation

References:

Genotypes:

FYPO:0003659 - abnormal mating type switching resulting in duplication or deletion in mating-type region

References:

Genotypes:

FYPO:0000670 - abnormal mitotic sister chromatid separation

References:

Genotypes:

FYPO:0004276 - abnormal negative regulation of transcription during G0

References:

Genotypes:

FYPO:0000855 - abnormal nucleosome positioning in heterochromatin

References:

Genotypes:

FYPO:0000443 - abnormal protein localization during vegetative growth

References:

Genotypes:

FYPO:0001131 - abnormal protein localization to heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0003066 - abnormal sporulation resulting in formation of ascus with fewer than four spores

References:

Genotypes:

FYPO:0007334 - abolished chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0007376 - abolished epigenetic heterochromatin inheritance

References:

Genotypes:

FYPO:0008050 - abolished histone H3-K4 methylation during meiosis

References:

Genotypes:

FYPO:0008038 - abolished histone H3-K4 trimethylation during mitosis

References:

Genotypes:

FYPO:0004170 - abolished histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0004745 - abolished histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0010028 - abolished histone H3-K9 dimethylation at rDNA during vegetative growth

References:

Genotypes:

FYPO:0004136 - abolished histone H3-K9 dimethylation at telomere during vegetative growth

References:

Genotypes:

FYPO:0003097 - abolished histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0008212 - abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0002566 - abolished histone H3-K9 methylation during vegetative growth

References:

Genotypes:

FYPO:0008368 - abolished histone H3-K9 trimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0006813 - abolished histone H3-K9 trimethylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0005843 - abolished histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0005848 - abolished histone methyltransferase activity (H3-K9 specific) activity

References:

Genotypes:

FYPO:0004312 - abolished protein localization to CENP-A containing chromatin

References:

Genotypes:

FYPO:0000634 - abolished protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0003744 - abolished protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0001678 - abolished protein localization to chromatin

References:

Genotypes:

FYPO:0008153 - abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0005850 - abolished protein localization to heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0001132 - abolished protein localization to heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0003074 - abolished protein localization to pericentric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0003109 - abolished protein localization to telomere during vegetative growth

References:

Genotypes:

FYPO:0000705 - abolished protein-protein interaction

References:

Genotypes:

FYPO:0002133 - abolished protein-RNA interaction

References:

Genotypes:

FYPO:0008011 - abolished siRNA loading onto RITS complex

References:

Genotypes:

FYPO:0007077 - abolished ubiquitin binding

References:

Genotypes:

FYPO:0007076 - altered histone H3-K9 methyltransferase substrate specificity

References:

Genotypes:

FYPO:0002835 - centromeric outer repeat transcript-derived siRNA absent

References:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

References:

Genotypes:

FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

References:

Genotypes:

FYPO:0006684 - decreased centromeric transcript binding

References:

Genotypes:

FYPO:0002834 - decreased chromatin silencing at centromere

References:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

References:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0003352 - decreased DNA double-strand break formation at mating-type locus

References:

Genotypes:

FYPO:0003101 - decreased heterochromatin assembly at protein coding gene

References:

Genotypes:

FYPO:0007009 - decreased heterochromatin assembly by small RNA

References:

Genotypes:

FYPO:0002609 - decreased histone H2A phosphorylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0002611 - decreased histone H2A phosphorylation at subtelomeric heterochromatin during mitotic S phase

References:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007213 - decreased histone H3-K9 dimethylation at heterochromatin island during vegetative growth

References:

Genotypes:

FYPO:0006269 - decreased histone H3-K9 dimethylation at protein coding gene during vegetative growth

References:

Genotypes:

FYPO:0007642 - decreased histone H3-K9 dimethylation at rDNA during G0

References:

Genotypes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0004137 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0000876 - decreased histone H3-K9 dimethylation during vegetative growth

References:

Genotypes:

FYPO:0003096 - decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0003571 - decreased histone H3-K9 methylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0003572 - decreased histone H3-K9 methylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0000883 - decreased histone H3-K9 trimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0005845 - decreased histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0004577 - decreased histone H3-K9 trimethylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0000882 - decreased histone H3-K9 trimethylation during vegetative growth

References:

Genotypes:

FYPO:0008195 - decreased histone H3-K9Me binding

References:

Genotypes:

FYPO:0004784 - decreased histone methyltransferase activity

References:

Genotypes:

FYPO:0005847 - decreased histone methyltransferase activity (H3-K9 specific) activity

References:

Genotypes:

FYPO:0000708 - decreased mating efficiency

References:

Genotypes:

FYPO:0000470 - decreased mating type switching

References:

Genotypes:

FYPO:0005931 - decreased nucleosome occupancy at silent mating-type cassette

References:

Genotypes:

FYPO:0003151 - decreased protein level during cellular response to heat

References:

Genotypes:

FYPO:0004313 - decreased protein localization to CENP-A containing chromatin

References:

Genotypes:

FYPO:0000450 - decreased protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0002842 - decreased protein localization to centromere outer repeat

References:

Genotypes:

FYPO:0006599 - decreased protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0005888 - decreased protein localization to centromeric chromatin, with protein mislocalized to nucleoplasm

References:

Genotypes:

FYPO:0006631 - decreased protein localization to chromatin

References:

Genotypes:

FYPO:0005167 - decreased protein localization to chromatin at centromere inner repeat

References:

Genotypes:

FYPO:0006818 - decreased protein localization to chromatin at centromere outer repeat

References:

Genotypes:

FYPO:0002391 - decreased protein localization to chromatin at rDNA

References:

Genotypes:

FYPO:0002474 - decreased protein localization to double-strand break site

References:

Genotypes:

FYPO:0003573 - decreased protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0005918 - decreased protein localization to subtelomeric heterochromatin

References:

Genotypes:

FYPO:0002387 - decreased protein localization to subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0001645 - decreased protein-protein interaction

References:

Genotypes:

FYPO:0002624 - decreased punctate nuclear protein localization

References:

Genotypes:

FYPO:0008369 - decreased silent mating type cassette heterochromatin tethering to nuclear periphery during vegetative growth

References:

Genotypes:

FYPO:0004205 - decreased siRNA level

References:

Genotypes:

FYPO:0000581 - decreased spore germination frequency

References:

Genotypes:

FYPO:0007322 - decreased stress granule assembly during cellular response to heat

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002649 - elongated kinetochore during mitosis

References:

Genotypes:

FYPO:0002019 - elongated telomeres during vegetative growth

References:

Genotypes:

FYPO:0003045 - heterochromatin assembly beyond boundary element IRC1R

References:

Genotypes:

FYPO:0003557 - increased antisense RNA level

References:

Genotypes:

FYPO:0005258 - increased cell population growth at high temperature

References:

Genotypes:

FYPO:0003938 - increased cell population growth during glucose starvation

References:

Genotypes:

FYPO:0009077 - increased cell population growth on ethanol carbon source

References:

Genotypes:

FYPO:0005261 - increased cell population growth on galactose carbon source

References:

Genotypes:

FYPO:0009101 - increased cell population growth on glycerol and galactose carbon source

References:

Genotypes:

FYPO:0004167 - increased cell population growth on glycerol carbon source

References:

Genotypes:

FYPO:0009094 - increased cell population growth on lysine and proline nitrogen source

References:

Genotypes:

FYPO:0009093 - increased cell population growth on lysine and serine nitrogen source

References:

Genotypes:

FYPO:0009072 - increased cell population growth on lysine nitrogen source

References:

Genotypes:

FYPO:0009098 - increased cell population growth on mannitol carbon source

References:

Genotypes:

FYPO:0009028 - increased cell population growth on proline nitrogen source

References:

Genotypes:

FYPO:0009074 - increased cell population growth on serine nitrogen source

References:

Genotypes:

FYPO:0009096 - increased cell population growth on xylose carbon source

References:

Genotypes:

FYPO:0004689 - increased cenH-derived RNA level

References:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0006079 - increased chromatin silencing at rDNA

References:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

References:

Genotypes:

FYPO:0004761 - increased histone exchange at pericentric heterochromatin

References:

Genotypes:

FYPO:0006815 - increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0000966 - increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0010018 - increased histone H3-K36 trimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0008048 - increased histone H3-K4 dimethylation at centromere during meiosis

References:

Genotypes:

FYPO:0002331 - increased histone H3-K4 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0008052 - increased histone H3-K4 dimethylation during mitosis

References:

Genotypes:

FYPO:0010013 - increased histone H3-K4 trimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0002369 - increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0000893 - increased histone H3-K9 acetylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0006681 - increased histone H3-K9 acetylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0006814 - increased histone H3-K9 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0000874 - increased histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007468 - increased histone H3-K9 dimethylation during G0

References:

Genotypes:

FYPO:0000873 - increased histone H3-K9 dimethylation during vegetative growth

References:

Genotypes:

FYPO:0010014 - increased histone H3-K9 monomethylation during vegetative growth

References:

Genotypes:

FYPO:0007310 - increased histone H4-K12 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007311 - increased histone H4-K16 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0005535 - increased histone H4-K16 acetylation at telomere during vegetative growth

References:

Genotypes:

FYPO:0007308 - increased histone H4-K5 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007309 - increased histone H4-K8 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0001742 - increased isochromosome formation

References:

Genotypes:

FYPO:0002354 - increased level of heterochromatin-encoded proteins

References:

Genotypes:

FYPO:0002664 - increased level of stress responsive gene mRNA during vegetative growth

References:

Genotypes:

FYPO:0000487 - increased meiotic recombination

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0001974 - increased number of cells with 1C DNA content

References:

Genotypes:

FYPO:0007227 - increased number of R-loops at centromere

References:

Genotypes:

FYPO:0003152 - increased protein level during cellular response to heat

References:

Genotypes:

FYPO:0001327 - increased protein level during vegetative growth

References:

Genotypes:

FYPO:0005893 - increased protein level in chromatin

References:

Genotypes:

FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0004377 - increased protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0002541 - increased protein localization to nucleoplasm

References:

Genotypes:

FYPO:0001130 - increased protein localization to nucleus during vegetative growth

References:

Genotypes:

FYPO:0004380 - increased protein localization to pericentric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0002082 - increased protein ubiquitination during vegetative growth

References:

Genotypes:

FYPO:0005523 - increased reverse centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0001890 - increased RNA level

References:

Genotypes:

FYPO:0006270 - increased RNA level during cellular response to phosphate starvation

References:

Genotypes:

FYPO:0003033 - increased RNA level during glucose starvation

References:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

References:

Genotypes:

FYPO:0008423 - increased spatial extent of protein localization to heterochromatin

References:

Genotypes:

FYPO:0005978 - increased spliced cen-dg RNA level

References:

Genotypes:

FYPO:0007320 - increased stress granule assembly during vegetative growth

References:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

References:

Genotypes:

FYPO:0004573 - increased telomeric transcript level

References:

Genotypes:

FYPO:0004557 - increased vegetative cell population growth

References:

Genotypes:

FYPO:0004344 - increased viability upon nitrogen starvation

References:

Genotypes:

FYPO:0002150 - inviable spore population

References:

Genotypes:

FYPO:0001489 - inviable vegetative cell

References:

Genotypes:

FYPO:0000228 - lagging mitotic chromosomes

References:

Genotypes:

FYPO:0004909 - loss of punctate nuclear protein localization, with protein distributed in nucleus

References:

Genotypes:

FYPO:0006518 - loss of viability in G0

References:

Genotypes:

FYPO:0006660 - loss of viability upon G0 to G1 transition

References:

Genotypes:

FYPO:0006670 - meiotic cell cycle entry in haploid cell

References:

Genotypes:

FYPO:0004382 - meroterically attached lagging mitotic chromosomes

References:

Genotypes:

FYPO:0006426 - normal attachment of spindle microtubules to kinetochore during meiosis I

References:

Genotypes:

FYPO:0001870 - normal centromere clustering at nuclear periphery during vegetative growth

References:

Genotypes:

FYPO:0002837 - normal centromeric outer repeat transcript-derived siRNA level

References:

Genotypes:

FYPO:0003800 - normal chromatin binding at replication origin

References:

Genotypes:

FYPO:0006992 - normal chromatin silencing at centromere otr1R

References:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0002219 - normal chromosome disjunction at meiosis I

References:

Genotypes:

FYPO:0007553 - normal G1 to G0 transition

References:

Genotypes:

FYPO:0003082 - normal genetic imprinting at mating-type locus

References:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

References:

Genotypes:

FYPO:0000963 - normal growth on hydroxyurea

References:

Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

References:

Genotypes:

FYPO:0002613 - normal histone H2A phosphorylation at mating type locus during vegetative growth

References:

Genotypes:

FYPO:0002358 - normal histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0006845 - normal histone methyltransferase activity (H3-K9 specific) activity

References:

Genotypes:

FYPO:0007147 - normal Mei2 nuclear dot formation

References:

Genotypes:

FYPO:0003153 - normal protein level during cellular response to heat

References:

Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

References:

Genotypes:

FYPO:0002574 - normal protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0008154 - normal protein localization to centromeric heterochromatin

References:

Genotypes:

FYPO:0006163 - normal protein localization to chromatin

References:

Genotypes:

FYPO:0005079 - normal protein localization to chromatin at centromere central core

References:

Genotypes:

FYPO:0005082 - normal protein localization to chromatin at long terminal repeat

References:

Genotypes:

FYPO:0005083 - normal protein localization to chromatin at ncRNA gene

References:

Genotypes:

FYPO:0005084 - normal protein localization to chromatin at rRNA gene

References:

Genotypes:

FYPO:0005086 - normal protein localization to chromatin at snoRNA gene

References:

Genotypes:

FYPO:0005085 - normal protein localization to chromatin at snRNA gene

References:

Genotypes:

FYPO:0005087 - normal protein localization to chromatin at tRNA gene

References:

Genotypes:

FYPO:0002625 - normal protein localization to chromatin rDNA

References:

Genotypes:

FYPO:0007278 - normal protein localization to euchromatin

References:

Genotypes:

FYPO:0005080 - normal protein localization to heterochromatin at centromere inner repeat

References:

Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0004378 - normal protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

References:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

References:

Genotypes:

FYPO:0003530 - normal S-phase DNA damage checkpoint

References:

Genotypes:

FYPO:0008236 - normal siRNA loading onto RITS complex

References:

Genotypes:

FYPO:0006842 - normal spatial extent of CENP-A containing nucleosome assembly

References:

Genotypes:

FYPO:0000943 - normal spore morphology

References:

Genotypes:

FYPO:0008414 - normal stress granule assembly during glucose starvation

References:

Genotypes:

FYPO:0005527 - normal subtelomeric chromatin knob formation

References:

Genotypes:

FYPO:0002687 - normal telomere length during vegetative growth

References:

Genotypes:

FYPO:0004924 - normal telomere tethering at nuclear periphery during vegetative growth

References:

Genotypes:

FYPO:0004579 - normal transposable element-derived small RNA level

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0007629 - normal viability during G0

References:

Genotypes:

FYPO:0001310 - normal viability in stationary phase

References:

Genotypes:

FYPO:0009032 - resistance to bortezomib

References:

Genotypes:

FYPO:0000763 - resistance to cadmium

References:

Genotypes:

FYPO:0009068 - resistance to ciclopirox olamine

References:

Genotypes:

FYPO:0000764 - resistance to cycloheximide

References:

Genotypes:

FYPO:0002693 - resistance to diamide

References:

Genotypes:

FYPO:0009034 - resistance to ethylenediaminetetraacetic acid

References:

Genotypes:

FYPO:0009070 - resistance to itraconazole

References:

Genotypes:

FYPO:0009085 - resistance to lithium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0000725 - resistance to methyl methanesulfonate

References:

Genotypes:

FYPO:0003383 - resistance to tert-butyl hydroperoxide

References:

Genotypes:

FYPO:0007808 - resistance to valproic acid

References:

Genotypes:

FYPO:0004431 - sensitive to 2-bromo-2-(((4-methylphenyl)sulfonyl)methyl)-1-indanone

References:

Genotypes:

FYPO:0004434 - sensitive to 4-amino-1-methyl-1H-imidazole-5-carboselenoamide

References:

Genotypes:

FYPO:0001098 - sensitive to 4-nitroquinoline N-oxide

References:

Genotypes:

FYPO:0004325 - sensitive to 5-fluorouracil

References:

Genotypes:

FYPO:0000084 - sensitive to 6-azauracil

References:

Genotypes:

FYPO:0007921 - sensitive to benzamidine

References:

Genotypes:

FYPO:0001701 - sensitive to bortezomib

References:

Genotypes:

FYPO:0000097 - sensitive to caffeine during vegetative growth

References:

Genotypes:

FYPO:0003840 - sensitive to carbendazim

References:

Genotypes:

FYPO:0000104 - sensitive to cycloheximide

References:

Genotypes:

FYPO:0007931 - sensitive to egtazic acid

References:

Genotypes:

FYPO:0000785 - sensitive to formamide

References:

Genotypes:

FYPO:0000087 - sensitive to hydrogen peroxide

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0001719 - sensitive to lithium

References:

Genotypes:

FYPO:0009086 - sensitive to lithium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0006836 - sensitive to magnesium chloride

References:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

References:

Genotypes:

FYPO:0001214 - sensitive to potassium chloride

References:

Genotypes:

FYPO:0007924 - sensitive to potassium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0000750 - sensitive to silver ions

References:

Genotypes:

FYPO:0006929 - sensitive to silver nanoparticles

References:

Genotypes:

FYPO:0005889 - sensitive to sodium chloride

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0001457 - sensitive to tunicamycin

References:

Genotypes:

FYPO:0003656 - sensitive to vanadate

References:

Genotypes:

FYPO:0004433 - sensitive to viridicatumtoxin

References:

Genotypes:

FYPO:0003182 - sister chromatid nondisjunction at meiosis II

References:

Genotypes:

FYPO:0005634 - sister kinetochore dissociation in meiotic metaphase I with equational sister chromatid segregation in meiosis I

References:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

References:

Genotypes:

FYPO:0002650 - split kinetochore during vegetative growth

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0000055 - no apparent S. cerevisiae ortholog

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF05033Pre-SETPre-SET_domPFAM
PF00856SETSET_domPFAM
PF00385ChromoChromo_domainPFAM
cd18632CD_Clr4_likeCDD
cd20073SET_SUV39H_Clr4-likeCDD
PS00598CHROMO_1Chromodomain_CSPROSITE_PATTERNS
PS50013CHROMO_2Chromo/chromo_shadow_domPROSITE_PROFILES
PS50280SETSET_domPROSITE_PROFILES
PS50867PRE_SETPre-SET_domPROSITE_PROFILES
PS50868POST_SETPost-SET_domPROSITE_PROFILES
SM00508PostSET_3Post-SET_domSMART
SM00468preset_2Pre-SET_domSMART
SM00317set_7SET_domSMART
SM00298chromo_7Chromo/chromo_shadow_domSMART
G3DSA:2.40.50.40:FF:000085FUNFAM
SSF54160Chromo domain-likeChromo-like_dom_sfSUPERFAMILY
SSF82199SET domainSET_dom_sfSUPERFAMILY
G3DSA:2.170.270.10SET domainSET_dom_sfGENE3D
G3DSA:2.40.50.40GENE3D
PTHR46223HISTONE-LYSINE N-METHYLTRANSFERASE SUV39HH3K9_Histone-Lys_N-MTasePANTHER
PIRSF009343SUV39_HMTase_SETH3-K9_MeTrfase_SUV39H1/2-likePIRSF
mobidb-lite-Disorderdisorder_predictionMOBIDB-Disorder
mobidb-lite-Polardisorder_predictionMOBIDB-Polar
mobidb-lite-Polyampholytedisorder_predictionMOBIDB-Polyampholyte

Orthologs

References / Literature

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Greenall A et al. J Biol Chem 2006 Mar 31;281(13):8732-9
PMID:30051891 - Automethylation-induced conformational switch in Clr4 (Suv39h) maintains epigenetic stability.
Iglesias N et al. Nature 2018 Aug;560(7719):504-508
PMID:33693625 - Dri1 mediates heterochromatin assembly via RNAi and histone deacetylation.
Ban H et al. Genetics 2021 May 17;218(1)
PMID:11069763 - Live analysis of lagging chromosomes during anaphase and their effect on spindle elongation rate in fission yeast.
Pidoux AL et al. J Cell Sci 2000 Dec;113 Pt 23:4177-91
PMID:23950735 - Global analysis of fission yeast mating genes reveals new autophagy factors.
Sun LL et al. PLoS Genet 2013;9(8):e1003715
PMID:36200823 - The chromatin remodeler RSC prevents ectopic CENP-A propagation into pericentromeric heterochromatin at the chromatin boundary.
Tsunemine S et al. Nucleic Acids Res 2022 Oct 28;50(19):10914-10928
PMID:37400983 - Cooperative DNA-binding activities of Chp2 are critical for its function in heterochromatin assembly.
Rahayu AF et al. J Biochem 2023 Sep 29;174(4):371-382
PMID:33823663 - A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans.
Halova L et al. Open Biol 2021 Apr;11(4):200405
PMID:15372076 - A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.
Sadaie M et al. EMBO J 2004 Oct 01;23(19):3825-35
PMID:38181050 - The Cross-Regulation Between Set1, Clr4, and Lsd1/2 in Schizosaccharomyces pombe.
Liu H et al. PLoS Genet 2024 Jan 05;20(1):e1011107
PMID:39945308 - Characterization of the Swi6/HP1 binding motif in its partner protein reveals the basis for the functional divergence of the HP1 family proteins in fission yeast.
Oya T et al. FASEB J 2025 Feb 28;39(4):e70387
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Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:25831549 - Epigenetics. Epigenetic inheritance uncoupled from sequence-specific recruitment.
Ragunathan K et al. Science 2015 Apr 03;348(6230):1258699
PMID:28765164 - Selective termination of lncRNA transcription promotes heterochromatin silencing and cell differentiation.
Touat-Todeschini L et al. EMBO J 2017 Sep 01;36(17):2626-2641
PMID:27738016 - RNA interference is essential for cellular quiescence.
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Garcia JF et al. G3 (Bethesda) 2015 May 08;5(7):1453-61
PMID:33511417 - Repression of a large number of genes requires interplay between homologous recombination and HIRA.
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Nishijima H et al. Mol Biol Cell 2006 Jun;17(6):2524-36
PMID:21760946 - Identification of genes affecting the toxicity of anti-cancer drug bortezomib by genome-wide screening in S. pombe.
Takeda K et al. PLoS One 2011;6(7):e22021
PMID:20935472 - Laser microsurgery provides evidence for merotelic kinetochore attachments in fission yeast cells lacking Pcs1 or Clr4.
Rumpf C et al. Cell Cycle 2010 Oct 01;9(19):3997-4004
PMID:9572142 - Defective meiosis in telomere-silencing mutants of Schizosaccharomyces pombe.
Nimmo ER et al. Nature 1998 Apr 23;392(6678):825-8
PMID:16246721 - The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast.
Yamada T et al. Mol Cell 2005 Oct 28;20(2):173-85
PMID:18923422 - Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe.
Nakamura K et al. EMBO J 2008 Nov 19;27(22):3036-46
PMID:29084823 - Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast.
Navarro FJ et al. J Cell Sci 2017 Dec 15;130(24):4144-4154
PMID:34984977 - Functional profiling of long intergenic non-coding RNAs in fission yeast.
Rodriguez-Lopez M et al. Elife 2022 Jan 05;11
PMID:29686279 - Iron homeostasis regulates facultative heterochromatin assembly in adaptive genome control.
Gallagher PS et al. Nat Struct Mol Biol 2018 May;25(5):372-383
PMID:15607976 - Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.
Motamedi MR et al. Cell 2004 Dec 17;119(6):789-802
PMID:17434129 - S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription.
Lan F et al. Mol Cell 2007 Apr 13;26(1):89-101
PMID:22683269 - HP1(Swi6) mediates the recognition and destruction of heterochromatic RNA transcripts.
Keller C et al. Mol Cell 2012 Jul 27;47(2):215-27
PMID:24240238 - Elimination of shelterin components bypasses RNAi for pericentric heterochromatin assembly.
Tadeo X et al. Genes Dev 2013 Nov 15;27(22):2489-99
PMID:26173815 - Genome-wide screen of fission yeast mutants for sensitivity to 6-azauracil, an inhibitor of transcriptional elongation.
Zhou H et al. Yeast 2015 Oct;32(10):643-55
PMID:28143796 - Clr4 specificity and catalytic activity beyond H3K9 methylation.
Kusevic D et al. Biochimie 2017 Apr;135:83-88
PMID:29214404 - The 19S proteasome regulates subtelomere silencing and facultative heterochromatin formation in fission yeast.
Seo HD et al. Curr Genet 2018 Jun;64(3):741-752
PMID:8001791 - Three additional linkage groups that repress transcription and meiotic recombination in the mating-type region of Schizosaccharomyces pombe.
Thon G et al. Genetics 1994 Sep;138(1):29-38
PMID:19164572 - Msc1 links dynamic Swi6/HP1 binding to cell fate determination.
Lawrence RJ et al. Proc Natl Acad Sci U S A 2009 Jan 27;106(4):1163-8
PMID:20661445 - Rad3 decorates critical chromosomal domains with gammaH2A to protect genome integrity during S-Phase in fission yeast.
Rozenzhak S et al. PLoS Genet 2010 Jul 22;6(7):e1001032
PMID:29216371 - Fission yeast Ccq1 is a modulator of telomerase activity.
Armstrong CA et al. Nucleic Acids Res 2018 Jan 25;46(2):704-716
PMID:22144463 - RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation.
Zofall M et al. Science 2012 Jan 06;335(6064):96-100
PMID:17627824 - The kinetochore proteins Pcs1 and Mde4 and heterochromatin are required to prevent merotelic orientation.
Gregan J et al. Curr Biol 2007 Jul 17;17(14):1190-200
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:8138176 - Mutations in rik1, clr2, clr3 and clr4 genes asymmetrically derepress the silent mating-type loci in fission yeast.
Ekwall K et al. Genetics 1994 Jan;136(1):53-64
PMID:31206516 - Regulation of ectopic heterochromatin-mediated epigenetic diversification by the JmjC family protein Epe1.
Sorida M et al. PLoS Genet 2019 Jun;15(6):e1008129
PMID:20705239 - The methyltransferase activity of Clr4Suv39h triggers RNAi independently of histone H3K9 methylation.
Gerace EL et al. Mol Cell 2010 Aug 13;39(3):360-72
PMID:22990236 - Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin.
Shim YS et al. EMBO J 2012 Nov 28;31(23):4375-87
PMID:22319459 - Raf1 Is a DCAF for the Rik1 DDB1-like protein and has separable roles in siRNA generation and chromatin modification.
Buscaino A et al. PLoS Genet 2012 Feb;8(2):e1002499
PMID:25972440 - Global regulation of heterochromatin spreading by Leo1.
Verrier L et al. Open Biol 2015 May;5(5)
PMID:34010645 - The histone H3K9M mutation synergizes with H3K14 ubiquitylation to selectively sequester histone H3K9 methyltransferase Clr4 at heterochromatin.
Shan CM et al. Cell Rep 2021 May 18;35(7):109137
PMID:23151475 - RNAi triggered by specialized machinery silences developmental genes and retrotransposons.
Yamanaka S et al. Nature 2013 Jan 24;493(7433):557-60
PMID:19693008 - Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs.
Zofall M et al. Nature 2009 Sep 17;461(7262):419-22
PMID:23260662 - Lsd1 and lsd2 control programmed replication fork pauses and imprinting in fission yeast.
Holmes A et al. Cell Rep 2012 Dec 27;2(6):1513-20
PMID:26537787 - Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast.
Køhler JB et al. Nat Commun 2015 Nov 05;6:8827
PMID:11273706 - Solution structure, domain features, and structural implications of mutants of the chromo domain from the fission yeast histone methyltransferase Clr4.
Horita DA et al. J Mol Biol 2001 Mar 30;307(3):861-70
PMID:21844224 - Spt6 is required for heterochromatic silencing in the fission yeast Schizosaccharomyces pombe.
Kiely CM et al. Mol Cell Biol 2011 Oct;31(20):4193-204
PMID:21892171 - Defects in RNA quality control factors reveal RNAi-independent nucleation of heterochromatin.
Reyes-Turcu FE et al. Nat Struct Mol Biol 2011 Sep 04;18(10):1132-8
PMID:27451393 - Role of Inner Nuclear Membrane Protein Complex Lem2-Nur1 in Heterochromatic Gene Silencing.
Banday S et al. J Biol Chem 2016 Sep 16;291(38):20021-9
PMID:18957202 - Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin.
Li F et al. Cell 2008 Oct 17;135(2):272-83
PMID:29722648 - Distinct 'safe zones' at the nuclear envelope ensure robust replication of heterochromatic chromosome regions.
Ebrahimi H et al. Elife 2018 May 03;7
PMID:32499408 - The molecular chaperone Hsp90 regulates heterochromatin assembly through stabilizing multiple complexes in fission yeast.
Sun L et al. J Cell Sci 2020 Jul 07;133(13)
PMID:34524082 - SUV39 SET domains mediate crosstalk of heterochromatic histone marks.
Stirpe A et al. Elife 2021 Sep 15;10
PMID:37445861 - Resistance to Chemotherapeutic 5-Fluorouracil Conferred by Modulation of Heterochromatic Integrity through Ino80 Function in Fission Yeast.
Lim KK et al. Int J Mol Sci 2023 Jun 26;24(13)
PMID:18345014 - Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin.
Zhang K et al. Nat Struct Mol Biol 2008 Apr;15(4):381-8
PMID:18252195 - Methylations of histone H3 lysine 9 and lysine 36 are functionally linked to DNA replication checkpoint control in fission yeast.
Kim HS et al. Biochem Biophys Res Commun 2008 Apr 04;368(2):419-25
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:40446033 - Mechanistic insights into the stimulation of the histone H3K9 methyltransferase Clr4 by proximal H3K14 ubiquitination.
Du Y et al. Sci Adv 2025 May 30;11(22):eadu1864
PMID:25245948 - Tls1 regulates splicing of shelterin components to control telomeric heterochromatin assembly and telomere length.
Wang J et al. Nucleic Acids Res 2014 Oct;42(18):11419-32
PMID:15317843 - Schizosaccharomyces pombe RanGAP homolog, SpRna1, is required for centromeric silencing and chromosome segregation.
Kusano A et al. Mol Biol Cell 2004 Nov;15(11):4960-70
PMID:18030666 - Mutations in deoxyribonucleotide biosynthesis pathway cause spreading of silencing across heterochromatic barriers at the mating-type region of the fission yeast.
Singh G et al. Yeast 2008 Feb;25(2):117-28
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:31269446 - CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.
Vo TV et al. Cell Rep 2019 Jul 02;28(1):267-281.e5
PMID:36617881 - Tandemly repeated genes promote RNAi-mediated heterochromatin formation via an antisilencing factor, Epe1, in fission yeast.
Asanuma T et al. Genes Dev 2022 Nov;36(21-24):1145-1159
PMID:38289024 - Heat stress-induced activation of MAPK pathway attenuates Atf1-dependent epigenetic inheritance of heterochromatin in fission yeast.
Sun L et al. Elife 2024 Jan 30;13
PMID:23613586 - Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification.
He C et al. Proc Natl Acad Sci U S A 2013 May 21;110(21):E1879-88
PMID:17114925 - A cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation.
Hong EJ et al. RNA Biol 2005;2(3):106-11
PMID:31784357 - Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance.
Iglesias N et al. Mol Cell 2020 Jan 02;77(1):51-66.e8
PMID:18204818 - Identification of small molecules inducing apoptosis by cell-based assay using fission yeast deletion mutants.
Chung KS et al. Invest New Drugs 2008 Aug;26(4):299-307
PMID:37913773 - TOR inactivation triggers heterochromatin formation in rDNA during glucose starvation.
Hirai H et al. Cell Rep 2023 Nov 28;42(11):113320
PMID:24210919 - Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.
Lee NN et al. Cell 2013 Nov 21;155(5):1061-74
PMID:41258116 - TORC2 inactivation promotes heterochromatin formation in rDNA and prolongs viability of quiescent fission yeast cells.
Hirai H et al. Commun Biol 2025 Nov 19;8(1):1606
PMID:18761674 - Fission yeast chromatin assembly factor 1 assists in the replication-coupled maintenance of heterochromatin.
Dohke K et al. Genes Cells 2008 Oct;13(10):1027-43
PMID:21151114 - Dicer associates with chromatin to repress genome activity in Schizosaccharomyces pombe.
Woolcock KJ et al. Nat Struct Mol Biol 2011 Jan;18(1):94-9
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:27334362 - Inner nuclear membrane protein Lem2 augments heterochromatin formation in response to nutritional conditions.
Tange Y et al. Genes Cells 2016 Aug;21(8):812-32
PMID:31468675 - H3K14 ubiquitylation promotes H3K9 methylation for heterochromatin assembly.
Oya E et al. EMBO Rep 2019 Oct 04;20(10):e48111
PMID:21385875 - Roles of fission yeast Grc3 protein in ribosomal RNA processing and heterochromatic gene silencing.
Kitano E et al. J Biol Chem 2011 Apr 29;286(17):15391-402
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:27538348 - Set3 contributes to heterochromatin integrity by promoting transcription of subunits of Clr4-Rik1-Cul4 histone methyltransferase complex in fission yeast.
Yu Y et al. Sci Rep 2016 Aug 19;6:31752
PMID:22474355 - Heterochromatin protein 1 homologue Swi6 acts in concert with Ers1 to regulate RNAi-directed heterochromatin assembly.
Hayashi A et al. Proc Natl Acad Sci U S A 2012 Apr 17;109(16):6159-64
PMID:10835380 - Four chromo-domain proteins of Schizosaccharomyces pombe differentially repress transcription at various chromosomal locations.
Thon G et al. Genetics 2000 Jun;155(2):551-68
PMID:23851719 - Spt6 prevents transcription-coupled loss of posttranslationally modified histone H3.
Kato H et al. Sci Rep 2013;3:2186
PMID:15218150 - RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteins.
Jia S et al. Science 2004 Jun 25;304(5679):1971-6
PMID:15537537 - Heterochromatin regulates cell type-specific long-range chromatin interactions essential for directed recombination.
Jia S et al. Cell 2004 Nov 12;119(4):469-80
PMID:21211723 - Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci.
Yamane K et al. Mol Cell 2011 Jan 07;41(1):56-66
PMID:26988418 - The proper connection between shelterin components is required for telomeric heterochromatin assembly.
Wang J et al. Genes Dev 2016 Apr 01;30(7):827-39
PMID:12618370 - Schizosaccharomyces pombe essential genes: a pilot study.
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