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protein coding gene - rhb1 (SPBC428.16c) - Rheb GTPase Rhb1

Gene summary

Standard name
rhb1
Systematic ID
SPBC428.16c
Product
Rheb GTPase Rhb1
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
O94363
ORFeome ID
07/07F12
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 473670..474497 reverse strand

Annotation

GO biological process

GO:1905589 - positive regulation of L-arginine import across plasma membrane

References:

GO:1904263 - positive regulation of TORC1 signaling

References:

GO cellular component

GO:0005829 - cytosol

References:

GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane

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GO:0005634 - nucleus

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GO molecular function

GO:0019003 - GDP binding

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GO:0005525 - GTP binding

References:

GO:0003924 - GTPase activity

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GO:0005515 - protein binding

References:

GO:0043539 - protein serine/threonine kinase activator activity

References:

Modification

MOD:00437 - farnesylated residue

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MOD:00114 - L-cysteine methyl ester

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MOD:00111 - S-farnesyl-L-cysteine

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MOD:01148 - ubiquitinylated lysine

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Multi-locus phenotype

FYPO:0003467 - altered splice site specificity

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0000708 - decreased mating efficiency

References:

Genotypes:

FYPO:0005456 - decreased number of cells with 1C DNA content

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Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0000761 - increased conjugation frequency

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Genotypes:

FYPO:0001890 - increased RNA level

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Genotypes:

FYPO:0002020 - increased RNA level during nitrogen starvation

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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Genotypes:

FYPO:0000099 - sensitive to canavanine

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Genotypes:

FYPO:0005203 - sensitive to ethionine

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Genotypes:

FYPO:0001525 - sensitive to L-thialysine

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Genotypes:

FYPO:0000271 - sensitive to salt stress

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Genotypes:

FYPO:0002060 - viable vegetative cell population

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Genotypes:

Qualitative gene expression

PomGeneEx:0000018 - protein level increased

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PomGeneEx:0000016 - RNA level constant

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Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0000152 - abnormal cellular response to nitrogen starvation

References:

Genotypes:

FYPO:0005206 - abnormal mitotic cell cycle regulation upon nitrogen source shift

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Genotypes:

FYPO:0010004 - abolished protein localization to plasma membrane during cellular response to nitrogen starvation

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Genotypes:

FYPO:0007434 - attenuated change in cell size at division upon shift to poor nitrogen source

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Genotypes:

FYPO:0000709 - decreased cell population growth during nitrogen starvation

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Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

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Genotypes:

FYPO:0001671 - decreased GDP binding

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Genotypes:

FYPO:0001529 - decreased GTP binding

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Genotypes:

FYPO:0001531 - decreased GTPase activity

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Genotypes:

FYPO:0001140 - decreased leucine import

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Genotypes:

FYPO:0005456 - decreased number of cells with 1C DNA content

References:

Genotypes:

FYPO:0010005 - decreased protein localization to plasma membrane during cellular response to nitrogen starvation

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0000998 - elongated cell during nitrogen starvation

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Genotypes:

FYPO:0006345 - increased duration of protein phosphorylation during nitrogen starvation

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Genotypes:

FYPO:0002681 - increased protein phosphorylation during nitrogen starvation

References:

Genotypes:

FYPO:0001038 - increased protein phosphorylation during vegetative growth

References:

Genotypes:

FYPO:0001571 - increased protein-protein interaction

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Genotypes:

FYPO:0002020 - increased RNA level during nitrogen starvation

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Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

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Genotypes:

FYPO:0002302 - inviable after spore germination, multiple cell divisions, spheroid cell

References:

Genotypes:

FYPO:0002151 - inviable spore

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0002048 - normal cell morphology during nitrogen starvation

References:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

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Genotypes:

FYPO:0001526 - normal growth on L-thialysine

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Genotypes:

FYPO:0001527 - normal GTP binding

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Genotypes:

FYPO:0001672 - normal GTPase activity

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Genotypes:

FYPO:0001147 - normal mating efficiency

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Genotypes:

FYPO:0005035 - normal protein phosphorylation during nitrogen starvation

References:

Genotypes:

FYPO:0001096 - normal RNA level during nitrogen starvation

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0001029 - resistance to canavanine

References:

Genotypes:

FYPO:0001524 - resistance to L-thialysine

References:

Genotypes:

FYPO:0001996 - RNA absent from cell during nitrogen starvation

References:

Genotypes:

FYPO:0001525 - sensitive to L-thialysine

References:

Genotypes:

FYPO:0000280 - sterile

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF00071RasSmall_GTPasePFAM
cd04137RheBCDD
PS51421RASSmall_GTPasePROSITE_PROFILES
PS51419RABPROSITE_PROFILES
PS51420RHOPROSITE_PROFILES
SM00174rho_sub_3Small_GTPaseSMART
SM00175rab_sub_5SMART
SM00173ras_sub_4SMART
PR00449RASTRNSFRMNGPRINTS
G3DSA:3.40.50.300:FF:000273FUNFAM
SSF52540P-loop containing nucleoside triphosphate hydrolasesP-loop_NTPaseSUPERFAMILY
G3DSA:3.40.50.300P-loop_NTPaseGENE3D
PTHR24070RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILYSmall_GTPase_Ras-typePANTHER
TIGR00231small_GTPSmall_GTP-bdNCBIFAM

Orthologs

References / Literature

PMID:23813957 - The fission yeast β-arrestin-like protein Any1 is involved in TSC-Rheb signaling and the regulation of amino acid transporters.
Nakase Y et al. J Cell Sci 2013 Sep 01;126(Pt 17):3972-81
PMID:17121544 - Fission yeast Tor2 links nitrogen signals to cell proliferation and acts downstream of the Rheb GTPase.
Uritani M et al. Genes Cells 2006 Dec;11(12):1367-79
PMID:30301783 - The RHEB-mTOR axis regulates expression of Tf2 transposons in fission yeast.
Nakase Y et al. J Cell Sci 2018 Nov 21;131(22)
PMID:12869548 - Identification of dominant negative mutants of Rheb GTPase and their use to implicate the involvement of human Rheb in the activation of p70S6K.
Tabancay AP et al. J Biol Chem 2003 Oct 10;278(41):39921-30
PMID:17179073 - Opposite effects of tor1 and tor2 on nitrogen starvation responses in fission yeast.
Weisman R et al. Genetics 2007 Mar;175(3):1153-62
PMID:17360675 - Point mutations in TOR confer Rheb-independent growth in fission yeast and nutrient-independent mammalian TOR signaling in mammalian cells.
Urano J et al. Proc Natl Acad Sci U S A 2007 Feb 27;104(9):3514-9
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:36408920 - UniProt: the Universal Protein Knowledgebase in 2023.
UniProt Consortium Nucleic Acids Res 2023 Jan 06;51(D1):D523-D531
PMID:29079657 - TORC1 and TORC2 converge to regulate the SAGA co-activator in response to nutrient availability.
Laboucarié T et al. EMBO Rep 2017 Dec;18(12):2197-2218
PMID:14718525 - Tsc1+ and tsc2+ regulate arginine uptake and metabolism in Schizosaccharomyces pombe.
van Slegtenhorst M et al. J Biol Chem 2004 Mar 26;279(13):12706-13
PMID:30824696 - Systematic analysis reveals the prevalence and principles of bypassable gene essentiality.
Li J et al. Nat Commun 2019 Mar 01;10(1):1002
PMID:10835385 - Loss of Rhb1, a Rheb-related GTPase in fission yeast, causes growth arrest with a terminal phenotype similar to that caused by nitrogen starvation.
Mach KE et al. Genetics 2000 Jun;155(2):611-22
PMID:34706246 - Cross talk between the upstream exon-intron junction and Prp2 facilitates splicing of non-consensus introns.
Hümmer S et al. Cell Rep 2021 Oct 26;37(4):109893
PMID:16624901 - A defect in protein farnesylation suppresses a loss of Schizosaccharomyces pombe tsc2+, a homolog of the human gene predisposing to tuberous sclerosis complex.
Nakase Y et al. Genetics 2006 Jun;173(2):569-78
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:29199950 - Ragulator and GATOR1 complexes promote fission yeast growth by attenuating TOR complex 1 through Rag GTPases.
Chia KH et al. Elife 2017 Dec 04;6
PMID:24344203 - Isp7 is a novel regulator of amino acid uptake in the TOR signaling pathway.
Laor D et al. Mol Cell Biol 2014 Mar;34(5):794-806
PMID:12618370 - Schizosaccharomyces pombe essential genes: a pilot study.
Decottignies A et al. Genome Res 2003 Mar;13(3):399-406
PMID:16262791 - Identification of novel single amino acid changes that result in hyperactivation of the unique GTPase, Rheb, in fission yeast.
Urano J et al. Mol Microbiol 2005 Nov;58(4):1074-86
PMID:20144990 - Fission yeast TORC1 regulates phosphorylation of ribosomal S6 proteins in response to nutrients and its activity is inhibited by rapamycin.
Nakashima A et al. J Cell Sci 2010 Mar 01;123(Pt 5):777-86
PMID:26412298 - A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.
Beckley JR et al. Mol Cell Proteomics 2015 Dec;14(12):3132-41
PMID:18219492 - The Tsc/Rheb signaling pathway controls basic amino acid uptake via the Cat1 permease in fission yeast.
Aspuria PJ et al. Mol Genet Genomics 2008 May;279(5):441-50
PMID:28357272 - A central role for TOR signalling in a yeast model for juvenile CLN3 disease.
Bond ME et al. Microb Cell 2015 Nov 11;2(12):466-480
PMID:10617635 - Protein farnesylation is critical for maintaining normal cell morphology and canavanine resistance in Schizosaccharomyces pombe.
Yang W et al. J Biol Chem 2000 Jan 07;275(1):429-38
PMID:19620394 - Distinctive responses to nitrogen starvation in the dominant active mutants of the fission yeast Rheb GTPase.
Murai T et al. Genetics 2009 Oct;183(2):517-27
PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
GO_REF:0000024 - Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity.
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
GO_REF:0000051 - S. pombe keyword mapping
PB_REF:0000001 - Protein modification annotation by manual transfer of experimentally-verified annotation data to orthologs based on curator judgment of sequence features.
PMID:17556368 - The Birt-Hogg-Dube and tuberous sclerosis complex homologs have opposing roles in amino acid homeostasis in Schizosaccharomyces pombe.
van Slegtenhorst M et al. J Biol Chem 2007 Aug 24;282(34):24583-90
PMID:23754748 - Splicing functions and global dependency on fission yeast slu7 reveal diversity in spliceosome assembly.
Banerjee S et al. Mol Cell Biol 2013 Aug;33(16):3125-36
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:25814783 - Conservation of the Tsc/Rheb/TORC1/S6K/S6 Signaling in Fission Yeast.
Nakashima A et al. Enzymes 2010;28:167-187
PMID:17261596 - Loss of the TOR kinase Tor2 mimics nitrogen starvation and activates the sexual development pathway in fission yeast.
Matsuo T et al. Mol Cell Biol 2007 Apr;27(8):3154-64
PMID:25639242 - Nitrogen regulates AMPK to control TORC1 signaling.
Davie E et al. Curr Biol 2015 Feb 16;25(4):445-54
PMID:16115814 - Pas1, a G1 cyclin, regulates amino acid uptake and rescues a delay in G1 arrest in Tsc1 and Tsc2 mutants in Schizosaccharomyces pombe.
van Slegtenhorst M et al. Hum Mol Genet 2005 Oct 01;14(19):2851-8