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protein coding gene - stt4 (SPBC577.06c) - plasma membrane 1-phosphatidylinositol 4-kinase, type III-alpha Stt4

Gene summary

Standard name
stt4
Systematic ID
SPBC577.06c
Product
plasma membrane 1-phosphatidylinositol 4-kinase, type III-alpha Stt4
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
Q9USR3
ORFeome ID
31/31B11
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 758321..764512 reverse strand

Annotation

PBO:0001120 - 2.7.1.67

Disease association

MONDO:0030669 - gastrointestinal defects and immunodeficiency syndrome 2

References:

MONDO:0014679 - polymicrogyria, perisylvian, with cerebellar hypoplasia and arthrogryposis

References:

MONDO:0030482 - spastic paraplegia 84, autosomal recessive

References:

GO biological process

GO:0180048 - phosphatidylinositol 4-phosphate biosynthetic process

References:

GO:0048015 - phosphatidylinositol-mediated signaling

References:

GO cellular component

GO:0005737 - cytoplasm

References:

GO:0005886 - plasma membrane

References:

GO molecular function

GO:0004430 - 1-phosphatidylinositol 4-kinase activity

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

MOD:01148 - ubiquitinylated lysine

References:

Multi-locus phenotype

FYPO:0008376 - abolished protein localization to cell cortex of cell tip during cellular response to osmotic stress

References:

Genotypes:

FYPO:0008371 - decreased protein localization to cell surface during cellular response to salt stress

References:

Genotypes:

FYPO:0001885 - decreased protein phosphorylation during salt stress

References:

Genotypes:

FYPO:0008370 - increased protein localization to cell surface during cellular response to salt stress

References:

Genotypes:

FYPO:0006005 - normal actomyosin contractile ring localization

References:

Genotypes:

FYPO:0004467 - normal protein localization to cell tip during cellular response to salt stress

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Genotypes:

FYPO:0006616 - viable vegetative cell with increased cell diameter

References:

Genotypes:

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0000121 - abnormal sporulation

References:

Genotypes:

FYPO:0009073 - decreased cell population growth on lysine nitrogen source

References:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0000636 - increased cell population growth rate

References:

Genotypes:

FYPO:0006626 - increased phosphatidylinositol-4,5-bisphosphate level in plasma membrane

References:

Genotypes:

FYPO:0008370 - increased protein localization to cell surface during cellular response to salt stress

References:

Genotypes:

FYPO:0007526 - increased protein phosphorylation during cellular response to salt stress

References:

Genotypes:

FYPO:0001309 - increased viability in stationary phase

References:

Genotypes:

FYPO:0001489 - inviable vegetative cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0004293 - mislocalized septum

References:

Genotypes:

FYPO:0009038 - resistance to egtazic acid

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Genotypes:

FYPO:0009035 - resistance to formamide

References:

Genotypes:

FYPO:0009085 - resistance to lithium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0009087 - resistance to magnesium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0009043 - resistance to potassium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0000022 - shmoo with long tip

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0006616 - viable vegetative cell with increased cell diameter

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF00454PI3_PI4_kinasePI3/4_kinase_cat_domPfam
PF00613PI3KaPI3K_accessory_domPfam
PF19274PI4K_NPI4K_NPfam
cd00871PI4KaCDD
cd05167PI4Kc_III_alphaCDD
PS00915PI3_4_KINASE_1PI3/4_kinase_CSPROSITE patterns
PS00916PI3_4_KINASE_2PI3/4_kinase_CSPROSITE patterns
PS50290PI3_4_KINASE_3PI3/4_kinase_cat_domPROSITE profiles
PS51545PIK_HELICALPI3K_accessory_domPROSITE profiles
SM00145PI3KaPI3K_accessory_domSMART
SM00146PI3KcPI3/4_kinase_cat_domSMART
G3DSA:1.10.1070.11:FF:000022CATH-FunFam
G3DSA:1.25.40.70:FF:000011CATH-FunFam
G3DSA:3.30.1010.10:FF:000014CATH-FunFam
G3DSA:1.10.1070.11PI3/4_kinase_cat_sfCATH-Gene3D
G3DSA:1.25.40.70PI3K_accessory_sfCATH-Gene3D
G3DSA:3.30.1010.10CATH-Gene3D
SSF48371ARM-type_foldSUPERFAMILY
SSF56112Kinase-like_dom_sfSUPERFAMILY
PTHR10048PI3/4_kinasePANTHER

Orthologs

References / Literature

PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
GO_REF:0000051 - S. pombe keyword mapping
PMID:28410370 - A systematic screen for morphological abnormalities during fission yeast sexual reproduction identifies a mechanism of actin aster formation for cell fusion.
Dudin O et al. PLoS Genet 2017 Apr;13(4):e1006721
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:23050226 - A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors.
Chen Z et al. G3 (Bethesda) 2012 Oct;2(10):1161-8
PMID:39540318 - Pck2 association with the plasma membrane and efficient response of the cell integrity pathway require regulation of PI4P homeostasis by exomer.
Moscoso-Romero E et al. Open Biol 2024 Nov;14(11):240101
PMID:33172987 - Fission yeast Opy1 is an endogenous PI(4,5)P 2 sensor that binds to the phosphatidylinositol 4-phosphate 5-kinase Its3.
Snider CE et al. J Cell Sci 2020 Dec 03;133(23)
PMID:37815455 - Characterization of Pik1 function in fission yeast reveals its conserved role in lipid synthesis and not cytokinesis.
Willet AH et al. J Cell Sci 2023 Nov 01;136(21)
PMID:37970674 - SUMOylation regulates Lem2 function in centromere clustering and silencing.
Strachan J et al. J Cell Sci 2023 Dec 01;136(23)
PMID:24013502 - Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries.
Wang J et al. Genes Dev 2013 Sep 01;27(17):1886-902
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:25452419 - Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence.
Sideri T et al. G3 (Bethesda) 2014 Dec 01;5(1):145-55
PMID:28784611 - Phosphoinositide-mediated ring anchoring resists perpendicular forces to promote medial cytokinesis.
Snider CE et al. J Cell Biol 2017 Oct 02;216(10):3041-3050
PMID:29996109 - Quantitative Phosphoproteomics Reveals the Signaling Dynamics of Cell-Cycle Kinases in the Fission Yeast Schizosaccharomyces pombe.
Swaffer MP et al. Cell Rep 2018 Jul 10;24(2):503-514
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:21652630 - Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis.
Snaith HA et al. J Cell Sci 2011 Jul 01;124(Pt 13):2187-99
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:29975157 - Analysis of the contribution of phosphoinositides to medial septation in fission yeast highlights the importance of PI(4,5)P 2 for medial contractile ring anchoring.
Snider CE et al. Mol Biol Cell 2018 Sep 01;29(18):2148-2155
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:34250083 - Barcode sequencing and a high-throughput assay for chronological lifespan uncover ageing-associated genes in fission yeast.
Romila CA et al. Microb Cell 2021 Jul 05;8(7):146-160
PMID:33823663 - A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans.
Halova L et al. Open Biol 2021 Apr;11(4):200405
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:28218250 - Chromatin remodeller Fun30 Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.
Lee J et al. Nat Commun 2017 Feb 20;8:14527
PMID:16537923 - Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.
Todd BL et al. Mol Cell Biol 2006 Apr;26(7):2817-31
PMID:32101745 - Dense Transposon Integration Reveals Essential Cleavage and Polyadenylation Factors Promote Heterochromatin Formation.
Lee SY et al. Cell Rep 2020 Feb 25;30(8):2686-2698.e8
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6