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protein coding gene - ntp1 (SPBC660.07) - alpha,alpha-trehalase Ntp1

Gene summary

Standard name
ntp1
Systematic ID
SPBC660.07
Product
alpha,alpha-trehalase Ntp1
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
O42893
ORFeome ID
50/50A10
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 206581..209641 forward strand

Annotation

PBO:0003082 - 3.2.1.28

Comment

PBO:0001037 - promoter contains CRE element

References:

PBO:0003080 - promoter contains HSE element

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PBO:0003079 - target of SAPK pathway

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Disease association

MONDO:0012803 - diarrhea-vomiting due to trehalase deficiency

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GO biological process

GO:0030437 - ascospore formation

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GO:0005993 - trehalose catabolic process

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GO cellular component

GO:0005829 - cytosol

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GO molecular function

GO:0004555 - alpha,alpha-trehalase activity

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GO:0005509 - calcium ion binding

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GO:0005515 - protein binding

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Modification

MOD:00046 - O-phospho-L-serine

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MOD:00047 - O-phospho-L-threonine

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MOD:00696 - phosphorylated residue

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MOD:01148 - ubiquitinylated lysine

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Multi-locus phenotype

FYPO:0000582 - decreased rate of spore germination

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Genotypes:

FYPO:0002686 - increased cellular trehalose level in spore

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Genotypes:

Qualitative gene expression

PomGeneEx:0000018 - protein level increased

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PomGeneEx:0000011 - RNA level increased

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PomGeneEx:0000014 - RNA present

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Quantitative gene expression

PBO:0006310 - protein level

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PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0000121 - abnormal sporulation

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Genotypes:

FYPO:0003463 - abolished alpha,alpha-trehalase activity

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Genotypes:

FYPO:0001482 - alpha,alpha-trehalase activity increase abolished during cellular response to heat

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Genotypes:

FYPO:0001481 - alpha,alpha-trehalase activity increase abolished during cellular response to nutrient

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Genotypes:

FYPO:0003458 - alpha,alpha-trehalase activity increase abolished during cellular response to salt stress

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Genotypes:

FYPO:0003464 - decreased alpha,alpha-trehalase activity during cellular response to heat

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Genotypes:

FYPO:0003465 - decreased alpha,alpha-trehalase activity during cellular response to salt stress

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Genotypes:

FYPO:0009091 - decreased cell population growth on lysine and proline nitrogen source

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Genotypes:

FYPO:0000582 - decreased rate of spore germination

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Genotypes:

FYPO:0002287 - decreased RNA level during cellular response to heat

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Genotypes:

FYPO:0001116 - decreased RNA level during cellular response to hydrogen peroxide

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Genotypes:

FYPO:0002304 - decreased RNA level during cellular response to salt stress

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Genotypes:

FYPO:0000581 - decreased spore germination frequency

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Genotypes:

FYPO:0006012 - elongated cell with abolished shmoo formation

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Genotypes:

FYPO:0001502 - increased cellular trehalose level during cellular response to osmotic stress

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Genotypes:

FYPO:0001445 - increased cellular trehalose level during heat shock

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Genotypes:

FYPO:0001444 - increased cellular trehalose level during vegetative growth

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Genotypes:

FYPO:0002686 - increased cellular trehalose level in spore

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Genotypes:

FYPO:0000245 - loss of viability in stationary phase

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Genotypes:

FYPO:0004295 - multiseptate cell

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Genotypes:

FYPO:0001480 - normal alpha,alpha-trehalase activity

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Genotypes:

FYPO:0003265 - normal alpha,alpha-trehalase activity increase during cellular response to heat stress

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Genotypes:

FYPO:0001682 - normal alpha,alpha-trehalase activity increase during cellular response to salt stress

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Genotypes:

FYPO:0001091 - normal cellular response to heat shock

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Genotypes:

FYPO:0001449 - normal cellular trehalose level

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Genotypes:

FYPO:0003466 - normal cellular trehalose level during cellular response to heat

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Genotypes:

FYPO:0003461 - normal cellular trehalose level during cellular response to salt stress

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Genotypes:

FYPO:0001454 - normal growth during cellular response to freezing

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Genotypes:

FYPO:0000960 - normal growth on ethanol

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Genotypes:

FYPO:0001147 - normal mating efficiency

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Genotypes:

FYPO:0000703 - normal protein-protein interaction

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Genotypes:

FYPO:0001487 - normal RNA level during cellular response to heat

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Genotypes:

FYPO:0000579 - normal spore germination

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Genotypes:

FYPO:0001315 - normal vegetative cell morphology

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Genotypes:

FYPO:0001420 - normal vegetative cell population growth rate

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Genotypes:

FYPO:0009030 - resistance to amitrole

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Genotypes:

FYPO:0009031 - resistance to bleomycin

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Genotypes:

FYPO:0002693 - resistance to diamide

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Genotypes:

FYPO:0009038 - resistance to egtazic acid

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Genotypes:

FYPO:0001090 - resistance to heat shock during vegetative growth

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Genotypes:

FYPO:0002578 - resistance to hydroxyurea

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Genotypes:

FYPO:0009085 - resistance to lithium chloride and sodium dodecyl sulfate

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Genotypes:

FYPO:0000852 - resistance to salt stress

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Genotypes:

FYPO:0005968 - resistance to sodium chloride

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Genotypes:

FYPO:0001452 - resistance to water deprivation

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Genotypes:

FYPO:0000104 - sensitive to cycloheximide

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Genotypes:

FYPO:0000842 - sensitive to ethanol during vegetative growth

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Genotypes:

FYPO:0000087 - sensitive to hydrogen peroxide

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Genotypes:

FYPO:0001719 - sensitive to lithium

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Genotypes:

FYPO:0002684 - sensitive to phlorizin during spore germination

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Genotypes:

FYPO:0001214 - sensitive to potassium chloride

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Genotypes:

FYPO:0007924 - sensitive to potassium chloride and sodium dodecyl sulfate

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Genotypes:

FYPO:0000797 - sensitive to tert-butyl hydroperoxide

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Genotypes:

FYPO:0001457 - sensitive to tunicamycin

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Genotypes:

FYPO:0003656 - sensitive to vanadate

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Genotypes:

FYPO:0002060 - viable vegetative cell population

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Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

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Genotypes:

Subunit composition

PBO:0015221 - heteromeric(2)

References:

PBO:0015230 - heteromeric(3)

References:

PBO:0015212 - homomeric(2)

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Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF01204TrehalaseGlyco_hydro_37PFAM
PF07492Trehalase_Ca-biTrehalase_Ca-bdPFAM
PS00927TREHALASE_1Glyco_hydro_37_CSPROSITE_PATTERNS
PS00928TREHALASE_2Glyco_hydro_37_CSPROSITE_PATTERNS
PR00744GLHYDRLASE37Glyco_hydro_37PRINTS
G3DSA:1.50.10.10:FF:000026FUNFAM
SSF48208Six-hairpin glycosidases6-hairpin_glycosidase_sfSUPERFAMILY
G3DSA:1.50.10.106hp_glycosidase-like_sfGENE3D
PTHR23403TREHALASEGlyco_hydro_37PANTHER
mobidb-lite-Disorderdisorder_predictionMOBIDB-Disorder

Orthologs

References / Literature

PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:39705284 - Proteomic and phosphoproteomic analyses reveal that TORC1 is reactivated by pheromone signaling during sexual reproduction in fission yeast.
Bérard M et al. PLoS Biol 2024 Dec 20;22(12):e3002963
PMID:25375137 - Systematic analysis of the role of RNA-binding proteins in the regulation of RNA stability.
Hasan A et al. PLoS Genet 2014 Nov;10(11):e1004684
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:11094289 - Role for trehalase during germination of spores in the fission yeast Schizosaccharomyces pombe.
Beltran FF et al. FEMS Microbiol Lett 2000 Dec 01;193(1):117-21
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:37970674 - SUMOylation regulates Lem2 function in centromere clustering and silencing.
Strachan J et al. J Cell Sci 2023 Dec 01;136(23)
PMID:31626996 - Multiplexed proteome profiling of carbon source perturbations in two yeast species with SL-SP3-TMT.
Paulo JA et al. J Proteomics 2020 Jan 06;210:103531
PMID:34296454 - The TOR-dependent phosphoproteome and regulation of cellular protein synthesis.
Mak T et al. EMBO J 2021 Aug 16;40(16):e107911
PMID:28357272 - A central role for TOR signalling in a yeast model for juvenile CLN3 disease.
Bond ME et al. Microb Cell 2015 Nov 11;2(12):466-480
PMID:29432178 - General amino acid control in fission yeast is regulated by a nonconserved transcription factor, with functions analogous to Gcn4/Atf4.
Duncan CDS et al. Proc Natl Acad Sci U S A 2018 Feb 20;115(8):E1829-E1838
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:39476757 - Characterization of Ksg1 protein kinase-dependent phosphoproteome in the fission yeast S. pombe.
Cipak L et al. Biochem Biophys Res Commun 2024 Oct 25;736:150895
PMID:15965643 - Functional characterization of Schizosaccharomyces pombe neutral trehalase altered in phosphorylatable serine residues.
Franco A et al. Arch Microbiol 2005 Sep;183(6):394-400
PMID:9838130 - Analysis of the ntp1+ gene, encoding neutral trehalase in the fission yeast Schizosaccharomyces pombe.
Soto T et al. Biochim Biophys Acta 1998 Nov 26;1443(1-2):225-9
PMID:10223994 - Accumulation of trehalose by overexpression of tps1, coding for trehalose-6-phosphate synthase, causes increased resistance to multiple stresses in the fission yeast schizosaccharomyces pombe.
Soto T et al. Appl Environ Microbiol 1999 May;65(5):2020-4
PMID:27886462 - Loss of ppr3, ppr4, ppr6, or ppr10 perturbs iron homeostasis and leads to apoptotic cell death in Schizosaccharomyces pombe.
Su Y et al. FEBS J 2017 Jan;284(2):324-337
PMID:12153582 - Molecular interaction of neutral trehalase with other enzymes of trehalose metabolism in the fission yeast Schizosaccharomyces pombe.
Soto T et al. Eur J Biochem 2002 Aug;269(15):3847-55
PMID:28410370 - A systematic screen for morphological abnormalities during fission yeast sexual reproduction identifies a mechanism of actin aster formation for cell fusion.
Dudin O et al. PLoS Genet 2017 Apr;13(4):e1006721
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:12855726 - Different roles for the stress-activated protein kinase pathway in the regulation of trehalose metabolism in Schizosaccharomyces pombe.
Paredes V et al. Microbiology (Reading) 2003 Jul;149(Pt 7):1745-1752
PMID:22730331 - Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions.
Nie M et al. J Biol Chem 2012 Aug 24;287(35):29610-9
PMID:15164362 - Transcriptional and post-translational regulation of neutral trehalase in Schizosaccharomyces pombe during thermal stress.
Paredes V et al. Yeast 2004 May;21(7):593-603
PMID:19547744 - Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species.
Beltrao P et al. PLoS Biol 2009 Jun 16;7(6):e1000134
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:21712547 - Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast.
Koch A et al. Sci Signal 2011 Jun 28;4(179):rs6
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:29856841 - Genome-wide screen reveals important roles for ESCRT proteins in drug/ion resistance of fission yeast.
Yang Y et al. PLoS One 2018;13(6):e0198516
PMID:29996109 - Quantitative Phosphoproteomics Reveals the Signaling Dynamics of Cell-Cycle Kinases in the Fission Yeast Schizosaccharomyces pombe.
Swaffer MP et al. Cell Rep 2018 Jul 10;24(2):503-514
PMID:30393157 - Overexpression of Schizosaccharomyces pombe tRNA 3'-end processing enzyme Trz2 leads to an increased cellular iron level and apoptotic cell death.
Shang J et al. Fungal Genet Biol 2019 Jan;122:11-20
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:33313903 - Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.
Rubio A et al. Nucleic Acids Res 2021 Jan 11;49(1):383-399
PMID:33823663 - A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans.
Halova L et al. Open Biol 2021 Apr;11(4):200405
PMID:34250083 - Barcode sequencing and a high-throughput assay for chronological lifespan uncover ageing-associated genes in fission yeast.
Romila CA et al. Microb Cell 2021 Jul 05;8(7):146-160
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PMID:23231582 - Genome-wide characterization of the phosphate starvation response in Schizosaccharomyces pombe.
Carter-O'Connell I et al. BMC Genomics 2012 Dec 12;13:697
PMID:17428646 - Solubilization and characterization of a cell wall-bound trehalase from ascospores of the fission yeast Schizosaccharomyces pombe.
Vicente-Soler J et al. Microbiol Res 2009;164(3):304-11
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:28218250 - Chromatin remodeller Fun30 Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.
Lee J et al. Nat Commun 2017 Feb 20;8:14527
PMID:12383265 - Cold induces stress-activated protein kinase-mediated response in the fission yeast Schizosaccharomyces pombe.
Soto T et al. Eur J Biochem 2002 Oct;269(20):5056-65
PMID:38889144 - Cytoplasmic fluidization contributes to breaking spore dormancy in fission yeast.
Sakai K et al. Proc Natl Acad Sci U S A 2024 Jun 25;121(26):e2405553121
PMID:9495778 - Characterization of mutants devoid of neutral trehalase activity in the fission yeast Schizosaccharomyces pombe: partial protection from heat shock and high-salt stress.
Cansado J et al. J Bacteriol 1998 Mar;180(5):1342-5
PMID:9974219 - Enhancement of neutral trehalase activity by oxidative stress in the fission yeast Schizosaccharomyces pombe.
Fernández J et al. Fungal Genet Biol 1998 Nov;25(2):79-86
PMID:9729425 - Trehalose-6P synthase is essential for trehalase activation triggered by glucose, nitrogen source or heat shock, but not by osmostress, in Schizosaccharomyces pombe.
Cansado J et al. Biochim Biophys Acta 1998 Aug 24;1381(3):271-8
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:12529438 - Global transcriptional responses of fission yeast to environmental stress.
Chen D et al. Mol Biol Cell 2003 Jan;14(1):214-29
PMID:12943532 - A role for calcium in the regulation of neutral trehalase activity in the fission yeast Schizosaccharomyces pombe.
Franco A et al. Biochem J 2003 Nov 15;376(Pt 1):209-17
PMID:27298342 - Identification of S-phase DNA damage-response targets in fission yeast reveals conservation of damage-response networks.
Willis NA et al. Proc Natl Acad Sci U S A 2016 Jun 28;113(26):E3676-85
PMID:28281664 - Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes.
Rallis C et al. Sci Rep 2017 Mar 10;7:44257