PomBase home

protein coding gene - cut14 (SPBP4H10.06c) - condensin complex SMC subunit Smc2

Gene summary

Standard name
cut14
Systematic ID
SPBP4H10.06c
Product
condensin complex SMC subunit Smc2
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
smc2
UniProt ID
P41003
ORFeome ID
34/34A08
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 2877687..2881368 reverse strand

Annotation

GO biological process

GO:0006325 - chromatin organization

References:

GO:0007076 - mitotic chromosome condensation

References:

GO cellular component

GO:0000785 - chromatin

References:

GO:0034506 - chromosome, centromeric core domain

References:

GO:0000796 - condensin complex

References:

GO:0005737 - cytoplasm

References:

GO:0000791 - euchromatin

References:

GO:0000776 - kinetochore

References:

GO:0005730 - nucleolus

References:

GO:0005634 - nucleus

References:

GO molecular function

GO:0005524 - ATP binding

References:

GO:0016887 - ATP hydrolysis activity

References:

GO:0061776 - ATP-dependent topological DNA co-entrapment activity

References:

GO:0003682 - chromatin binding

References:

GO:0015616 - DNA translocase activity

References:

GO:0106260 - DNA-DNA tethering activity

References:

GO:1990814 - DNA/DNA annealing activity

References:

GO:0003690 - double-stranded DNA binding

References:

GO:0003697 - single-stranded DNA binding

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

MOD:00047 - O-phospho-L-threonine

References:

MOD:00048 - O4'-phospho-L-tyrosine

References:

MOD:01149 - sumoylated lysine

References:

MOD:00583 - thiophosphorylated residue

References:

Multi-locus phenotype

FYPO:0000620 - abnormal cell cycle arrest in mitotic metaphase

References:

Genotypes:

FYPO:0000214 - abnormal mitotic chromosome condensation

References:

Genotypes:

FYPO:0005442 - abnormal telomeric DNA separation

References:

Genotypes:

FYPO:0002678 - abolished protein phosphorylation

References:

Genotypes:

FYPO:0001055 - cut following normal mitotic chromosome condensation

References:

Genotypes:

FYPO:0003165 - cut with abnormal chromosome segregation

References:

Genotypes:

FYPO:0005439 - decreased DNA/DNA annealing activity

References:

Genotypes:

FYPO:0005424 - decreased mitotic chromosome condensation during telophase

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0003166 - monoseptate vegetative cell with binucleate and anucleate compartments

References:

Genotypes:

FYPO:0003594 - normal anaphase-promoting complex-dependent protein catabolic process

References:

Genotypes:

FYPO:0001926 - normal cellular response to hydroxyurea

References:

Genotypes:

FYPO:0004787 - normal DNA/DNA annealing activity

References:

Genotypes:

FYPO:0003481 - viable elongated vegetative cell, elongated upon mitotic entry

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Protein features

PBO:0111821 - SMC family

Qualitative gene expression

PomGeneEx:0000018 - protein level increased

References:

PomGeneEx:0000011 - RNA level increased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0001930 - abnormal cellular response to gamma radiation

References:

Genotypes:

FYPO:0001352 - abnormal chromatin organization during vegetative growth

References:

Genotypes:

FYPO:0005438 - abnormal DNA/DNA annealing activity

References:

Genotypes:

FYPO:0000214 - abnormal mitotic chromosome condensation

References:

Genotypes:

FYPO:0000141 - abnormal mitotic sister chromatid segregation

References:

Genotypes:

FYPO:0004507 - abolished centromeric DNA separation

References:

Genotypes:

FYPO:0006302 - abolished intra-arm chromosome contact change during mitosis

References:

Genotypes:

FYPO:0003844 - abolished mitotic chromosome condensation

References:

Genotypes:

FYPO:0004508 - abolished rDNA separation

References:

Genotypes:

FYPO:0004418 - cut cell with decreased poly(A)+ mRNA export from nucleus

References:

Genotypes:

FYPO:0003165 - cut with abnormal chromosome segregation

References:

Genotypes:

FYPO:0007638 - decreased anisotropic motion of mitotic chromatin

References:

Genotypes:

FYPO:0004876 - decreased chromatin binding at heat-shock-inducible genes during cellular response to heat shock

References:

Genotypes:

FYPO:0007516 - decreased DNA volume

References:

Genotypes:

FYPO:0003286 - decreased mitotic chromosome condensation

References:

Genotypes:

FYPO:0001382 - decreased protein kinase activity

References:

Genotypes:

FYPO:0004385 - decreased single-stranded DNA binding

References:

Genotypes:

FYPO:0005545 - decreased Tf body formation

References:

Genotypes:

FYPO:0007270 - decreased Tf body tethering to centromere

References:

Genotypes:

FYPO:0004031 - decreased UV-damage excision repair

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0004098 - incomplete mitotic sister chromatid segregation, with phi-shaped DNA mass

References:

Genotypes:

FYPO:0006248 - increased centromere clustering at nuclear periphery during mitosis

References:

Genotypes:

FYPO:0007517 - increased chromatin mobility

References:

Genotypes:

FYPO:0000972 - increased number of Rad52 foci during vegetative growth

References:

Genotypes:

FYPO:0002573 - increased number of Ssb1 foci

References:

Genotypes:

FYPO:0007518 - increased transcription-induced DNA damage

References:

Genotypes:

FYPO:0001110 - inviable after spore germination, multiple cell divisions, normal morphology

References:

Genotypes:

FYPO:0002379 - inviable after spore germination, without cell division, with elongated germ tube

References:

Genotypes:

FYPO:0002151 - inviable spore

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0001387 - loss of viability at high temperature

References:

Genotypes:

FYPO:0003758 - mitotic spindle elongation without chromosome separation

References:

Genotypes:

FYPO:0007519 - normal DNA volume

References:

Genotypes:

FYPO:0001399 - normal mitotic spindle

References:

Genotypes:

FYPO:0006259 - normal mitotic spindle length during metaphase

References:

Genotypes:

FYPO:0001221 - normal nucleus:cytoplasm ratio

References:

Genotypes:

FYPO:0007328 - normal number of Rad52 foci during vegetative growth

References:

Genotypes:

FYPO:0002901 - normal protein localization to kinetochore during vegetative growth

References:

Genotypes:

FYPO:0001487 - normal RNA level during cellular response to heat

References:

Genotypes:

FYPO:0006279 - normal termination of RNA polymerase II transcription

References:

Genotypes:

FYPO:0005740 - normal transcription during cellular response to heat

References:

Genotypes:

FYPO:0004662 - normal viability following cellular response to UV

References:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0000268 - sensitive to UV during vegetative growth

References:

Genotypes:

FYPO:0004433 - sensitive to viridicatumtoxin

References:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

References:

Genotypes:

FYPO:0003241 - unequal mitotic sister chromatid segregation

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Taxonomic conservation

PBO:0011072 - conserved in archaea

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF02463SMC_NRecF/RecN/SMC_NPFAM
PF06470SMC_hingeSMC_hingePFAM
cd03273ABC_SMC2_eukSmc2_ABCCDD
SM00968SMC_hinge_2SMC_hingeSMART
G3DSA:1.20.1060.20:FF:000005FUNFAM
G3DSA:3.40.50.300:FF:000385FUNFAM
G3DSA:3.40.50.300:FF:000278FUNFAM
SSF75553Smc hinge domainSMC_hinge_sfSUPERFAMILY
SSF52540P-loop containing nucleoside triphosphate hydrolasesP-loop_NTPaseSUPERFAMILY
G3DSA:3.40.50.300P-loop_NTPaseGENE3D
G3DSA:3.30.70.1620GENE3D
G3DSA:1.20.1060.20GENE3D
G3DSA:1.10.287.1490GENE3D
PTHR43977STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3PANTHER
PIRSF005719SMCSMCPIRSF
CoilCoilCOILS

Orthologs

References / Literature

PMID:23263988 - Quantitative analysis of chromosome condensation in fission yeast.
Petrova B et al. Mol Cell Biol 2013 Mar;33(5):984-98
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:25764183 - Condensin HEAT subunits required for DNA repair, kinetochore/centromere function and ploidy maintenance in fission yeast.
Xu X et al. PLoS One 2015;10(3):e0119347
PMID:19454013 - Conserved features of cohesin binding along fission yeast chromosomes.
Schmidt CK et al. Genome Biol 2009;10(5):R52
PMID:18204818 - Identification of small molecules inducing apoptosis by cell-based assay using fission yeast deletion mutants.
Chung KS et al. Invest New Drugs 2008 Aug;26(4):299-307
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:22645654 - Opposing role of condensin hinge against replication protein A in mitosis and interphase through promoting DNA annealing.
Akai Y et al. Open Biol 2011 Dec;1(4):110023
PMID:25847133 - RNA pol II transcript abundance controls condensin accumulation at mitotically up-regulated and heat-shock-inducible genes in fission yeast.
Nakazawa N et al. Genes Cells 2015 Jun;20(6):481-99
PMID:28218250 - Chromatin remodeller Fun30 Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.
Lee J et al. Nat Commun 2017 Feb 20;8:14527
PMID:28882993 - The condensin complex is a mechanochemical motor that translocates along DNA.
Terakawa T et al. Science 2017 Nov 03;358(6363):672-676
PMID:31615333 - Condensin locates at transcriptional termination sites in mitosis, possibly releasing mitotic transcripts.
Nakazawa N et al. Open Biol 2019 Oct 31;9(10):190125
PMID:9285594 - DNA renaturation activity of the SMC complex implicated in chromosome condensation.
Sutani T et al. Nature 1997 Aug 21;388(6644):798-801
PMID:26204128 - Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation.
Sutani T et al. Nat Commun 2015 Jul 23;6:7815
PMID:10485849 - Fission yeast condensin complex: essential roles of non-SMC subunits for condensation and Cdc2 phosphorylation of Cut3/SMC4.
Sutani T et al. Genes Dev 1999 Sep 01;13(17):2271-83
PMID:33153481 - Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage.
Kakui Y et al. Genome Biol 2020 Nov 05;21(1):272
PMID:21540296 - Condensin phosphorylated by the Aurora-B-like kinase Ark1 is continuously required until telophase in a mode distinct from Top2.
Nakazawa N et al. J Cell Sci 2011 Jun 01;124(Pt 11):1795-807
PMID:27548313 - Transcription factors mediate condensin recruitment and global chromosomal organization in fission yeast.
Kim KD et al. Nat Genet 2016 Oct;48(10):1242-52
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:33434270 - Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast.
Gerguri T et al. Nucleic Acids Res 2021 Feb 22;49(3):1294-1312
PMID:15507118 - An interactive gene network for securin-separase, condensin, cohesin, Dis1/Mtc1 and histones constructed by mass transformation.
Yuasa T et al. Genes Cells 2004 Nov;9(11):1069-82
PMID:18362178 - Dissection of the essential steps for condensin accumulation at kinetochores and rDNAs during fission yeast mitosis.
Nakazawa N et al. J Cell Biol 2008 Mar 24;180(6):1115-31
PMID:23084836 - Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation.
Tanaka A et al. Mol Cell 2012 Nov 30;48(4):532-46
PMID:26404184 - High Confidence Fission Yeast SUMO Conjugates Identified by Tandem Denaturing Affinity Purification.
Nie M et al. Sci Rep 2015 Sep 25;5:14389
PMID:33468217 - Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex.
Weigt M et al. Epigenetics Chromatin 2021 Jan 19;14(1):8
PMID:24362309 - A genetic screen for functional partners of condensin in fission yeast.
Robellet X et al. G3 (Bethesda) 2014 Feb 19;4(2):373-81
PMID:20709788 - Ccq1p and the condensin proteins Cut3p and Cut14p prevent telomere entanglements in the fission yeast Schizosaccharomyces pombe.
Motwani T et al. Eukaryot Cell 2010 Oct;9(10):1612-21
PMID:25520186 - ATPase-dependent auto-phosphorylation of the open condensin hinge diminishes DNA binding.
Akai Y et al. Open Biol 2014 Dec;4(12)
PMID:22540037 - Predicting the fission yeast protein interaction network.
Pancaldi V et al. G3 (Bethesda) 2012 Apr;2(4):453-67
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PMID:30914423 - Isolation of Fission Yeast Condensin Temperature-Sensitive Mutants with Single Amino Acid Substitutions Targeted to Hinge Domain.
Xu X et al. G3 (Bethesda) 2019 May 07;9(5):1777-1783
PMID:37820734 - Establishment of dsDNA-dsDNA interactions by the condensin complex.
Tang M et al. Mol Cell 2023 Nov 02;83(21):3787-3800.e9
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:7957061 - Fission yeast cut3 and cut14, members of a ubiquitous protein family, are required for chromosome condensation and segregation in mitosis.
Saka Y et al. EMBO J 1994 Oct 17;13(20):4938-52
PMID:8395535 - Identification of seven new cut genes involved in Schizosaccharomyces pombe mitosis.
Samejima I et al. J Cell Sci 1993 May;105 ( Pt 1):135-43
PMID:24945319 - CPF-associated phosphatase activity opposes condensin-mediated chromosome condensation.
Vanoosthuyse V et al. PLoS Genet 2014 Jun;10(6):e1004415
PMID:25392932 - RNA processing factors Swd2.2 and Sen1 antagonize RNA Pol III-dependent transcription and the localization of condensin at Pol III genes.
Legros P et al. PLoS Genet 2014 Nov;10(11):e1004794
PMID:26257282 - Interaction between TBP and Condensin Drives the Organization and Faithful Segregation of Mitotic Chromosomes.
Iwasaki O et al. Mol Cell 2015 Sep 03;59(5):755-67
PMID:15161942 - The nucleolus is involved in mRNA export from the nucleus in fission yeast.
Ideue T et al. J Cell Sci 2004 Jun 15;117(Pt 14):2887-95
PMID:9802907 - Dynamics of centromeres during metaphase-anaphase transition in fission yeast: Dis1 is implicated in force balance in metaphase bipolar spindle.
Nabeshima K et al. Mol Biol Cell 1998 Nov;9(11):3211-25
PMID:28825727 - Condensin-mediated remodeling of the mitotic chromatin landscape in fission yeast.
Kakui Y et al. Nat Genet 2017 Oct;49(10):1553-1557
PMID:11927555 - The fission yeast NIMA kinase Fin1p is required for spindle function and nuclear envelope integrity.
Krien MJ et al. EMBO J 2002 Apr 02;21(7):1713-22
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:26537787 - Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast.
Køhler JB et al. Nat Commun 2015 Nov 05;6:8827
GO_REF:0000002 - Comments
PMID:12161753 - The transcriptional program of meiosis and sporulation in fission yeast.
Mata J et al. Nat Genet 2002 Sep;32(1):143-7
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:31072933 - Suppressor screening reveals common kleisin-hinge interaction in condensin and cohesin, but different modes of regulation.
Xu X et al. Proc Natl Acad Sci U S A 2019 May 28;116(22):10889-10898
PMID:12000964 - Cnd2 has dual roles in mitotic condensation and interphase.
Aono N et al. Nature 2002 May 09;417(6885):197-202