PomBase home

protein coding gene - pop7 (SPBP8B7.01c) - RNase P and RNase MRP subunit Pop7

Gene summary

Standard name
pop7
Systematic ID
SPBP8B7.01c
Product
RNase P and RNase MRP subunit Pop7
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
pop6
UniProt ID
O94251
ORFeome ID
42/42B01
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome II: 3633502..3634614 reverse strand

Annotation

GO biological process

GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

References:

GO:0034965 - intronic box C/D snoRNA processing

References:

GO:0001682 - tRNA 5'-leader removal

References:

GO:0008033 - tRNA processing

References:

GO cellular component

GO:0005655 - nucleolar ribonuclease P complex

References:

GO:0005730 - nucleolus

References:

GO:0005634 - nucleus

References:

GO:0000172 - ribonuclease MRP complex

References:

GO molecular function

GO:0000171 - ribonuclease MRP activity

References:

GO:0004526 - ribonuclease P activity

References:

Qualitative gene expression

PomGeneEx:0000012 - RNA level decreased

References:

Quantitative gene expression

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0000951 - inviable small vegetative cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

Protein features

IDNameInterPro nameDB name
PF12328Rpp20Pop7/Rpp20Pfam
G3DSA:3.30.110.20Alba-like_dom_sfCATH-Gene3D
PTHR15314Pop7/Rpp20PANTHER

Orthologs

References / Literature

PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
GO_REF:0000002 - Comments
InterPro:IPR002775 - Unknown title
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:26896847 - Ensembl comparative genomics resources.
Herrero J et al. Database (Oxford) 2016;2016
PMID:25401760 - RNase MRP cleaves pre-tRNASer-Met in the tRNA maturation pathway.
Saito Y et al. PLoS One 2014;9(11):e112488
PMID:16537923 - Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.
Todd BL et al. Mol Cell Biol 2006 Apr;26(7):2817-31
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
GO_REF:0000024 - Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity.