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protein coding gene - mis16 (SPCC1672.10) - histone H4 chaperone, CENP-A recruiting complex CENP-A chaperone, WD repeat subunit Mis16

Gene summary

Standard name
mis16
Systematic ID
SPCC1672.10
Product
histone H4 chaperone, CENP-A recruiting complex CENP-A chaperone, WD repeat subunit Mis16
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
O94244
ORFeome ID
23/23D08
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome III: 584126..585893 forward strand

Annotation

Disease association

MONDO:0976123 - spermatogenic failure, X-linked, 9

References:

GO biological process

GO:0034080 - CENP-A containing chromatin assembly

References:

GO:0006338 - chromatin remodeling

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GO cellular component

GO:0098654 - CENP-A recruiting complex

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GO:0000785 - chromatin

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GO:0000775 - chromosome, centromeric region

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GO:0005737 - cytoplasm

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GO:0000776 - kinetochore

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GO:0005634 - nucleus

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GO molecular function

GO:0140463 - chromatin-protein adaptor activity

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GO:0000510 - H3-H4 histone complex chaperone activity

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GO:0042393 - histone binding

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GO:0005515 - protein binding

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Modification

MOD:00046 - O-phospho-L-serine

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Multi-locus phenotype

FYPO:0000634 - abolished protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0006238 - decreased protein localization to centromere

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0003241 - unequal mitotic sister chromatid segregation

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Genotypes:

Protein features

PBO:0111751 - WD repeat protein

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

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Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0000141 - abnormal mitotic sister chromatid segregation

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Genotypes:

FYPO:0003786 - abolished protein localization to centromere central core during vegetative growth

References:

Genotypes:

FYPO:0000634 - abolished protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0003744 - abolished protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0001269 - abolished protein localization to kinetochore during vegetative growth

References:

Genotypes:

FYPO:0000705 - abolished protein-protein interaction

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Genotypes:

FYPO:0003740 - decreased CENP-A containing chromatin assembly

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Genotypes:

FYPO:0006238 - decreased protein localization to centromere

References:

Genotypes:

FYPO:0004904 - decreased protein localization to centromere central core during vegetative growth

References:

Genotypes:

FYPO:0002902 - decreased protein localization to kinetochore during vegetative growth

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Genotypes:

FYPO:0001645 - decreased protein-protein interaction

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Genotypes:

FYPO:0007327 - DNA content decreased during G0

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Genotypes:

FYPO:0003745 - increased histone H3 acetylation at centromere central core during vegetative growth

References:

Genotypes:

FYPO:0003415 - increased histone H4 acetylation at centromere central core during vegetative growth

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Genotypes:

FYPO:0003742 - inviable after spore germination, multiple cell divisions, unequal chromosome segregation

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Genotypes:

FYPO:0002059 - inviable cell population

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Genotypes:

FYPO:0002151 - inviable spore

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0000284 - large and small daughter nuclei, with unequal mitotic sister chromatid segregation

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Genotypes:

FYPO:0006518 - loss of viability in G0

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Genotypes:

FYPO:0002901 - normal protein localization to kinetochore during vegetative growth

References:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

References:

Genotypes:

FYPO:0003241 - unequal mitotic sister chromatid segregation

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF12265CAF1C_H4-bdHistone-bd_RBBP4-like_NPFAM
PF23609Beta-prop_EIPR1Beta-prop_EIPR1-likePFAM
PF00400WD40WD40_rptPFAM
cd00200WD40CDD
PS00678WD_REPEATS_1WD40_repeat_CSPROSITE_PATTERNS
PS50082WD_REPEATS_2WD40_rptPROSITE_PROFILES
PS50294WD_REPEATS_REGIONPROSITE_PROFILES
SM00320WD40_4WD40_rptSMART
PR00320GPROTEINBRPTWD40_PAC1PRINTS
G3DSA:2.130.10.10:FF:000512FUNFAM
SSF50978WD40 repeat-likeWD40_repeat_dom_sfSUPERFAMILY
G3DSA:2.130.10.10WD40/YVTN_repeat-like_dom_sfGENE3D
PTHR22850WD40 REPEAT FAMILYWD_repeat_RBAP46/RBAP48/MSI1PANTHER

Orthologs

References / Literature

PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:28827290 - Kinetochore Components Required for Centromeric Chromatin Assembly Are Impacted by Msc1 in Schizosaccharomyces pombe .
Gao C et al. Genetics 2017 Oct;207(2):559-569
PMID:28974540 - The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components.
Salas-Pino S et al. J Cell Biol 2017 Nov 06;216(11):3591-3608
PMID:33823663 - A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans.
Halova L et al. Open Biol 2021 Apr;11(4):200405
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:29996109 - Quantitative Phosphoproteomics Reveals the Signaling Dynamics of Cell-Cycle Kinases in the Fission Yeast Schizosaccharomyces pombe.
Swaffer MP et al. Cell Rep 2018 Jul 10;24(2):503-514
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:36200823 - The chromatin remodeler RSC prevents ectopic CENP-A propagation into pericentromeric heterochromatin at the chromatin boundary.
Tsunemine S et al. Nucleic Acids Res 2022 Oct 28;50(19):10914-10928
PMID:18362178 - Dissection of the essential steps for condensin accumulation at kinetochores and rDNAs during fission yeast mitosis.
Nakazawa N et al. J Cell Biol 2008 Mar 24;180(6):1115-31
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:18493607 - A DNA polymerase alpha accessory protein, Mcl1, is required for propagation of centromere structures in fission yeast.
Natsume T et al. PLoS One 2008 May 21;3(5):e2221
PMID:28977643 - Regulation of mitotic recombination between DNA repeats in centromeres.
Zafar F et al. Nucleic Acids Res 2017 Nov 02;45(19):11222-11235
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:19217403 - Fission yeast Scm3 mediates stable assembly of Cnp1/CENP-A into centromeric chromatin.
Williams JS et al. Mol Cell 2009 Feb 13;33(3):287-98
PMID:23091701 - Impaired coenzyme A synthesis in fission yeast causes defective mitosis, quiescence-exit failure, histone hypoacetylation and fragile DNA.
Nakamura T et al. Open Biol 2012 Sep;2(9):120117
PMID:25375240 - The kinetochore protein Kis1/Eic1/Mis19 ensures the integrity of mitotic spindles through maintenance of kinetochore factors Mis6/CENP-I and CENP-A.
Hirai H et al. PLoS One 2014;9(11):e111905
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:18257517 - Phosphoproteome analysis of fission yeast.
Wilson-Grady JT et al. J Proteome Res 2008 Mar;7(3):1088-97
PMID:26343758 - Mis16 Independently Recognizes Histone H4 and the CENP-ACnp1-Specific Chaperone Scm3sp.
An S et al. J Mol Biol 2015 Oct 09;427(20):3230-3240
PMID:40015273 - A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin.
Skribbe M et al. Mol Cell 2025 Feb 19;
PMID:21712547 - Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast.
Koch A et al. Sci Signal 2011 Jun 28;4(179):rs6
PMID:22771823 - Schizosaccharomyces pombe Hat1 (Kat1) is associated with Mis16 and is required for telomeric silencing.
Tong K et al. Eukaryot Cell 2012 Sep;11(9):1095-103
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:38084929 - The cysteine-rich domain in CENP-A chaperone Scm3HJURP ensures centromere targeting and kinetochore integrity.
Folco HD et al. Nucleic Acids Res 2023 Dec 12;
PMID:31371524 - Subunit interactions and arrangements in the fission yeast Mis16-Mis18-Mis19 complex.
Korntner-Vetter M et al. Life Sci Alliance 2019 Aug;2(4)
PMID:34810257 - Ccp1-Ndc80 switch at the N terminus of CENP-T regulates kinetochore assembly.
Dong Q et al. Proc Natl Acad Sci U S A 2021 Nov 30;118(48)
PMID:19217404 - Fission yeast Scm3: A CENP-A receptor required for integrity of subkinetochore chromatin.
Pidoux AL et al. Mol Cell 2009 Feb 13;33(3):299-311
PMID:24789708 - Eic1 links Mis18 with the CCAN/Mis6/Ctf19 complex to promote CENP-A assembly.
Subramanian L et al. Open Biol 2014 Apr 30;4(4):140043
PMID:11751918 - The fission yeast ES2 homologue, Bis1, interacts with the Ish1 stress-responsive nuclear envelope protein.
Taricani L et al. J Biol Chem 2002 Mar 22;277(12):10562-72
PMID:27666591 - Ccp1 Homodimer Mediates Chromatin Integrity by Antagonizing CENP-A Loading.
Dong Q et al. Mol Cell 2016 Oct 06;64(1):79-91
PMID:16537923 - Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.
Todd BL et al. Mol Cell Biol 2006 Apr;26(7):2817-31
PMID:28228545 - Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB.
Upadhyay U et al. Mol Biol Cell 2017 Apr 15;28(8):1132-1146
PMID:24774534 - Schizosaccharomyces pombe centromere protein Mis19 links Mis16 and Mis18 to recruit CENP-A through interacting with NMD factors and the SWI/SNF complex.
Hayashi T et al. Genes Cells 2014 Jul;19(7):541-54
PMID:29804820 - Mis16 Switches Function from a Histone H4 Chaperone to a CENP-A Cnp1 -Specific Assembly Factor through Eic1 Interaction.
An S et al. Structure 2018 Jul 03;26(7):960-971.e4
PMID:19366728 - Genetic control of cellular quiescence in S. pombe.
Sajiki K et al. J Cell Sci 2009 May 01;122(Pt 9):1418-29
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:15369671 - Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres.
Hayashi T et al. Cell 2004 Sep 17;118(6):715-29