PomBase home

protein coding gene - dcr1 (SPCC188.13c) - dicer

Gene summary

Standard name
dcr1
Systematic ID
SPCC188.13c
Product
dicer
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
SPCC584.10c
UniProt ID
Q09884
ORFeome ID
30/30F09
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome III: 1504949..1510557 reverse strand

Annotation

Comment

PBO:0000206 - deletion mutant expression profiling

References:

Disease association

MONDO:0100216 - DICER1-related tumor predisposition

References:

MONDO:0018445 - global developmental delay - lung cysts - overgrowth - Wilms tumor syndrome

References:

MONDO:0007681 - goiter, multinodular 1, with or without Sertoli-Leydig cell tumors

References:

MONDO:0011014 - pleuropulmonary blastoma

References:

MONDO:0859046 - rhabdomyosarcoma, embryonal, 2

References:

GO biological process

GO:0033562 - co-transcriptional gene silencing by RNA interference machinery

References:

GO:0070317 - negative regulation of G0 to G1 transition

References:

GO:0010629 - negative regulation of gene expression

References:

GO:0030466 - silent mating-type cassette heterochromatin formation

References:

GO:0030422 - siRNA processing

References:

GO:0140727 - siRNA-mediated pericentric heterochromatin formation

References:

GO:0006363 - termination of RNA polymerase I transcription

References:

GO:0006369 - termination of RNA polymerase II transcription

References:

GO:0006386 - termination of RNA polymerase III transcription

References:

GO cellular component

GO:0000785 - chromatin

References:

GO:0005737 - cytoplasm

References:

GO:0005829 - cytosol

References:

GO:0000791 - euchromatin

References:

GO:0034399 - nuclear periphery

References:

GO:0005634 - nucleus

References:

GO:0005721 - pericentric heterochromatin

References:

GO molecular function

GO:0005524 - ATP binding

References:

GO:0003690 - double-stranded DNA binding

References:

GO:0003725 - double-stranded RNA binding

References:

GO:1990188 - euchromatin binding

References:

GO:0004525 - ribonuclease III activity

References:

GO:0008270 - zinc ion binding

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

Multi-locus phenotype

FYPO:0000005 - abnormal cell morphology

References:

Genotypes:

FYPO:0000427 - abnormal G1 to G0 transition

References:

Genotypes:

FYPO:0000468 - abnormal mating type switching

References:

Genotypes:

FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0004746 - abolished heterochromatin assembly involved in chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0004170 - abolished histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0004745 - abolished histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0006112 - abolished histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0006111 - abolished histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0004136 - abolished histone H3-K9 dimethylation at telomere during vegetative growth

References:

Genotypes:

FYPO:0003097 - abolished histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0008212 - abolished histone H3-K9 methylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0005738 - abolished histone H3-S10 phosphorylation during vegetative growth

References:

Genotypes:

FYPO:0008153 - abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0005850 - abolished protein localization to heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0002835 - centromeric outer repeat transcript-derived siRNA absent

References:

Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

References:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

References:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0007224 - decreased heterochromatin assembly at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0000877 - decreased histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007642 - decreased histone H3-K9 dimethylation at rDNA during G0

References:

Genotypes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0004137 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0003571 - decreased histone H3-K9 methylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0003572 - decreased histone H3-K9 methylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0000708 - decreased mating efficiency

References:

Genotypes:

FYPO:0003573 - decreased protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

References:

Genotypes:

FYPO:0000581 - decreased spore germination frequency

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0000017 - elongated cell

References:

Genotypes:

FYPO:0000998 - elongated cell during nitrogen starvation

References:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0006079 - increased chromatin silencing at rDNA

References:

Genotypes:

FYPO:0007639 - increased DNA damage at rDNA during G0

References:

Genotypes:

FYPO:0004544 - increased duration of heterochromatin maintenance

References:

Genotypes:

FYPO:0000577 - increased gene silencing

References:

Genotypes:

FYPO:0007634 - increased histone H3-K14 acetylation at rDNA during vegetative growth

References:

Genotypes:

FYPO:0005995 - increased lncRNA level

References:

Genotypes:

FYPO:0004032 - increased protein localization to chromatin at rDNA

References:

Genotypes:

FYPO:0004377 - increased protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

References:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

References:

Genotypes:

FYPO:0004573 - increased telomeric transcript level

References:

Genotypes:

FYPO:0000944 - inviable spore with normal morphology

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0000228 - lagging mitotic chromosomes

References:

Genotypes:

FYPO:0006518 - loss of viability in G0

References:

Genotypes:

FYPO:0006660 - loss of viability upon G0 to G1 transition

References:

Genotypes:

FYPO:0002360 - normal chromatin silencing at centromere

References:

Genotypes:

FYPO:0006992 - normal chromatin silencing at centromere otr1R

References:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0003555 - normal chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0007553 - normal G1 to G0 transition

References:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

References:

Genotypes:

FYPO:0004744 - normal heterochromatin maintenance involved in chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0007001 - normal histone exchange at pericentric heterochromatin

References:

Genotypes:

FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0005866 - normal histone H3-K9 methylation at rDNA during vegetative growth

References:

Genotypes:

FYPO:0000472 - normal mating type switching

References:

Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0003576 - normal protein localization to subtelomeric heterochromatin

References:

Genotypes:

FYPO:0006368 - normal spatial extent of centromeric heterochromatin assembly

References:

Genotypes:

FYPO:0007629 - normal viability during G0

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0006821 - slow vegetative cell growth

References:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Protein features

PBO:0111747 - DEAD/DEAH box helicase

PBO:0111944 - PAZ domain

Qualitative gene expression

PomGeneEx:0000018 - protein level increased

References:

Quantitative gene expression

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0007645 - abnormal chromosome segregation during G1 to G0 transition

References:

Genotypes:

FYPO:0000427 - abnormal G1 to G0 transition

References:

Genotypes:

FYPO:0004814 - abnormal termination of RNA polymerase II transcription at highly transcribed protein-coding genes

References:

Genotypes:

FYPO:0004812 - abnormal termination of RNA polymerase II transcription at rDNA

References:

Genotypes:

FYPO:0004813 - abnormal termination of RNA polymerase II transcription at tDNA

References:

Genotypes:

FYPO:0001934 - abolished cell population growth on glycerol carbon source

References:

Genotypes:

FYPO:0001093 - abolished chromatin binding

References:

Genotypes:

FYPO:0000659 - abolished DNA binding

References:

Genotypes:

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0006112 - abolished histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0006111 - abolished histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0002566 - abolished histone H3-K9 methylation during vegetative growth

References:

Genotypes:

FYPO:0003744 - abolished protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0005850 - abolished protein localization to heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0002568 - abolished protein localization to nuclear periphery

References:

Genotypes:

FYPO:0003074 - abolished protein localization to pericentric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0000705 - abolished protein-protein interaction

References:

Genotypes:

FYPO:0002133 - abolished protein-RNA interaction

References:

Genotypes:

FYPO:0008011 - abolished siRNA loading onto RITS complex

References:

Genotypes:

FYPO:0002835 - centromeric outer repeat transcript-derived siRNA absent

References:

Genotypes:

FYPO:0000273 - centromeric outer repeat transcripts absent

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

References:

Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

References:

Genotypes:

FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

References:

Genotypes:

FYPO:0002577 - decreased chromatin binding

References:

Genotypes:

FYPO:0002834 - decreased chromatin silencing at centromere

References:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0003101 - decreased heterochromatin assembly at protein coding gene

References:

Genotypes:

FYPO:0007009 - decreased heterochromatin assembly by small RNA

References:

Genotypes:

FYPO:0000877 - decreased histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0007643 - decreased histone H3-K9 dimethylation at centromere outer repeat during G0

References:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007213 - decreased histone H3-K9 dimethylation at heterochromatin island during vegetative growth

References:

Genotypes:

FYPO:0006269 - decreased histone H3-K9 dimethylation at protein coding gene during vegetative growth

References:

Genotypes:

FYPO:0007644 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during G0

References:

Genotypes:

FYPO:0003096 - decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0003571 - decreased histone H3-K9 methylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0003103 - decreased mRNA-derived small RNA level

References:

Genotypes:

FYPO:0004821 - decreased number of Rad52 foci at highly transcribed protein-coding genes

References:

Genotypes:

FYPO:0000835 - decreased protein level

References:

Genotypes:

FYPO:0000450 - decreased protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0002842 - decreased protein localization to centromere outer repeat

References:

Genotypes:

FYPO:0006599 - decreased protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0002391 - decreased protein localization to chromatin at rDNA

References:

Genotypes:

FYPO:0003573 - decreased protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0002339 - decreased protein localization to nuclear periphery

References:

Genotypes:

FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0002387 - decreased protein localization to subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0001645 - decreased protein-protein interaction

References:

Genotypes:

FYPO:0002134 - decreased protein-RNA interaction

References:

Genotypes:

FYPO:0004817 - decreased rDNA antisense small RNA level

References:

Genotypes:

FYPO:0004818 - decreased tDNA antisense small RNA level

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0000429 - delayed G0 to G1 transition

References:

Genotypes:

FYPO:0000998 - elongated cell during nitrogen starvation

References:

Genotypes:

FYPO:0004808 - increased cellular protein aggregate level during cellular response to heat

References:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0002836 - increased centromeric outer repeat transcript-derived siRNA level

References:

Genotypes:

FYPO:0004982 - increased centromeric transcript level

References:

Genotypes:

FYPO:0002980 - increased chromatin binding

References:

Genotypes:

FYPO:0008148 - increased CUT RNA level

References:

Genotypes:

FYPO:0007639 - increased DNA damage at rDNA during G0

References:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

References:

Genotypes:

FYPO:0004761 - increased histone exchange at pericentric heterochromatin

References:

Genotypes:

FYPO:0002331 - increased histone H3-K4 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007337 - increased histone H3-K4 methylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0000893 - increased histone H3-K9 acetylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0006814 - increased histone H3-K9 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0007640 - increased histone H3-K9 dimethylation at rDNA during G0

References:

Genotypes:

FYPO:0007468 - increased histone H3-K9 dimethylation during G0

References:

Genotypes:

FYPO:0002354 - increased level of heterochromatin-encoded proteins

References:

Genotypes:

FYPO:0002664 - increased level of stress responsive gene mRNA during vegetative growth

References:

Genotypes:

FYPO:0005995 - increased lncRNA level

References:

Genotypes:

FYPO:0002564 - increased mature tRNA level during vegetative growth

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0004822 - increased number of R-loops at rDNA

References:

Genotypes:

FYPO:0004819 - increased number of Rad52 foci at rDNA replication origins

References:

Genotypes:

FYPO:0004820 - increased number of Rad52 foci at rDNA replication pause sites

References:

Genotypes:

FYPO:0004710 - increased number of Rad52 foci during G0 to G1 transition

References:

Genotypes:

FYPO:0004032 - increased protein localization to chromatin at rDNA

References:

Genotypes:

FYPO:0003010 - increased protein localization to subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0001890 - increased RNA level

References:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

References:

Genotypes:

FYPO:0005978 - increased spliced cen-dg RNA level

References:

Genotypes:

FYPO:0004573 - increased telomeric transcript level

References:

Genotypes:

FYPO:0000228 - lagging mitotic chromosomes

References:

Genotypes:

FYPO:0006518 - loss of viability in G0

References:

Genotypes:

FYPO:0006660 - loss of viability upon G0 to G1 transition

References:

Genotypes:

FYPO:0006996 - normal antisense RNA level

References:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

References:

Genotypes:

FYPO:0002567 - normal centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0002360 - normal chromatin silencing at centromere

References:

Genotypes:

FYPO:0004331 - normal chromatin silencing at centromere central core

References:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0003555 - normal chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0007553 - normal G1 to G0 transition

References:

Genotypes:

FYPO:0005866 - normal histone H3-K9 methylation at rDNA during vegetative growth

References:

Genotypes:

FYPO:0005865 - normal histone H3-K9 methylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0000472 - normal mating type switching

References:

Genotypes:

FYPO:0000644 - normal protein localization during vegetative growth

References:

Genotypes:

FYPO:0002625 - normal protein localization to chromatin rDNA

References:

Genotypes:

FYPO:0004378 - normal protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0002563 - normal protein localization to nuclear periphery

References:

Genotypes:

FYPO:0003576 - normal protein localization to subtelomeric heterochromatin

References:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

References:

Genotypes:

FYPO:0006368 - normal spatial extent of centromeric heterochromatin assembly

References:

Genotypes:

FYPO:0000596 - normal transposition

References:

Genotypes:

FYPO:0004826 - progressively decreasing rDNA copy number during successive meiotic generations

References:

Genotypes:

FYPO:0000067 - resistance to brefeldin A

References:

Genotypes:

FYPO:0009085 - resistance to lithium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0009043 - resistance to potassium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0000096 - sensitive to cadmium

References:

Genotypes:

FYPO:0000104 - sensitive to cycloheximide

References:

Genotypes:

FYPO:0000087 - sensitive to hydrogen peroxide

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0001719 - sensitive to lithium

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0006076 - siRNA absent from cell

References:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

References:

Genotypes:

FYPO:0004825 - stably decreased rDNA copy number during vegetative growth

References:

Genotypes:

FYPO:0002112 - viable curved vegetative cell

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0000055 - no apparent S. cerevisiae ortholog

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF00271Helicase_CHelicase_C-likePFAM
PF22389Dcr1-like_dsRNA-bd_domDcr1_dsRNA-bd_domPFAM
PF03368Dicer_dimerDicer_dimerisationPFAM
PF00636Ribonuclease_3RNase_III_domPFAM
PF04851ResIIIHelicase/UvrB_NPFAM
cd00593RIBOcRNase_III_domCDD
cd18802SF2_C_dicerCDD
cd18034DEXHc_dicerCDD
PS00517RNASE_3_1RNase_III_domPROSITE_PATTERNS
PS51192HELICASE_ATP_BIND_1Helicase_ATP-bdPROSITE_PROFILES
PS51194HELICASE_CTERHelicase_C-likePROSITE_PROFILES
PS50142RNASE_3_2RNase_III_domPROSITE_PROFILES
PS51327DICER_DSRBFDicer_dimerisationPROSITE_PROFILES
SM00487ultradead3Helicase_ATP-bdSMART
SM00490helicmild6Helicase_C-likeSMART
SM00535riboneu5RNase_III_domSMART
G3DSA:1.10.1520.10:FF:000036FUNFAM
G3DSA:3.40.50.300:FF:000628FUNFAM
SSF69065RNase III domain-likeRNase_III_sfSUPERFAMILY
SSF52540P-loop containing nucleoside triphosphate hydrolasesP-loop_NTPaseSUPERFAMILY
G3DSA:3.30.160.400GENE3D
G3DSA:1.10.1520.10Ribonuclease III domainRNase_III_sfGENE3D
G3DSA:3.40.50.300P-loop_NTPaseGENE3D
G3DSA:3.30.160.380Dicer dimerisation domainDicer_dimer_sfGENE3D
PTHR14950DICER-RELATEDPANTHER

Orthologs

References / Literature

PMID:15615848 - RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production.
Sugiyama T et al. Proc Natl Acad Sci U S A 2005 Jan 04;102(1):152-7
PMID:23478021 - Replication fork stability is essential for the maintenance of centromere integrity in the absence of heterochromatin.
Li PC et al. Cell Rep 2013 Mar 28;3(3):638-45
PMID:20705239 - The methyltransferase activity of Clr4Suv39h triggers RNAi independently of histone H3K9 methylation.
Gerace EL et al. Mol Cell 2010 Aug 13;39(3):360-72
PMID:32496538 - Cdk9 and H2Bub1 signal to Clr6-CII/Rpd3S to suppress aberrant antisense transcription.
Sansó M et al. Nucleic Acids Res 2020 Jul 27;48(13):7154-7168
PMID:31822915 - Mkt1 is required for RNAi-mediated silencing and establishment of heterochromatin in fission yeast.
Taglini F et al. Nucleic Acids Res 2020 Feb 20;48(3):1239-1253
PMID:20178743 - Dicer-independent primal RNAs trigger RNAi and heterochromatin formation.
Halic M et al. Cell 2010 Feb 19;140(4):504-16
PMID:25774602 - Rapid epigenetic adaptation to uncontrolled heterochromatin spreading.
Wang J et al. Elife 2015 Mar 16;4
PMID:27343236 - Restriction of Retrotransposon Mobilization in Schizosaccharomyces pombe by Transcriptional Silencing and Higher-Order Chromatin Organization.
Murton HE et al. Genetics 2016 Aug;203(4):1669-78
PMID:38289024 - Heat stress-induced activation of MAPK pathway attenuates Atf1-dependent epigenetic inheritance of heterochromatin in fission yeast.
Sun L et al. Elife 2024 Jan 30;13
PMID:25831549 - Epigenetics. Epigenetic inheritance uncoupled from sequence-specific recruitment.
Ragunathan K et al. Science 2015 Apr 03;348(6230):1258699
PMID:23151475 - RNAi triggered by specialized machinery silences developmental genes and retrotransposons.
Yamanaka S et al. Nature 2013 Jan 24;493(7433):557-60
PMID:19164572 - Msc1 links dynamic Swi6/HP1 binding to cell fate determination.
Lawrence RJ et al. Proc Natl Acad Sci U S A 2009 Jan 27;106(4):1163-8
PMID:39094565 - Mapping the dynamics of epigenetic adaptation in S. pombe during heterochromatin misregulation.
Larkin A et al. Dev Cell 2024 Jul 26;
PMID:27053105 - Mga2 Transcription Factor Regulates an Oxygen-responsive Lipid Homeostasis Pathway in Fission Yeast.
Burr R et al. J Biol Chem 2016 Jun 03;291(23):12171-83
PMID:28404620 - Accumulation of RNA on chromatin disrupts heterochromatic silencing.
Brönner C et al. Genome Res 2017 Jul;27(7):1174-1183
PMID:29654060 - RNAi drives nonreciprocal translocations at eroding chromosome ends to establish telomere-free linear chromosomes.
Begnis M et al. Genes Dev 2018 Apr 01;32(7-8):537-554
PMID:22431512 - RNAi keeps Atf1-bound stress response genes in check at nuclear pores.
Woolcock KJ et al. Genes Dev 2012 Apr 01;26(7):683-92
PMID:31626996 - Multiplexed proteome profiling of carbon source perturbations in two yeast species with SL-SP3-TMT.
Paulo JA et al. J Proteomics 2020 Jan 06;210:103531
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:20421495 - RNAi and heterochromatin repress centromeric meiotic recombination.
Ellermeier C et al. Proc Natl Acad Sci U S A 2010 May 11;107(19):8701-5
PMID:22002604 - RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.
Zaratiegui M et al. Nature 2011 Oct 16;479(7371):135-8
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:25417108 - Dicer promotes transcription termination at sites of replication stress to maintain genome stability.
Castel SE et al. Cell 2014 Oct 23;159(3):572-83
PMID:28765164 - Selective termination of lncRNA transcription promotes heterochromatin silencing and cell differentiation.
Touat-Todeschini L et al. EMBO J 2017 Sep 01;36(17):2626-2641
PMID:22989756 - RNA interference regulates the cell cycle checkpoint through the RNA export factor, Ptr1, in fission yeast.
Iida T et al. Biochem Biophys Res Commun 2012 Oct 12;427(1):143-7
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:27538348 - Set3 contributes to heterochromatin integrity by promoting transcription of subunits of Clr4-Rik1-Cul4 histone methyltransferase complex in fission yeast.
Yu Y et al. Sci Rep 2016 Aug 19;6:31752
PMID:29722648 - Distinct 'safe zones' at the nuclear envelope ensure robust replication of heterochromatic chromosome regions.
Ebrahimi H et al. Elife 2018 May 03;7
PMID:24095277 - Argonaute and Triman generate dicer-independent priRNAs and mature siRNAs to initiate heterochromatin formation.
Marasovic M et al. Mol Cell 2013 Oct 24;52(2):173-83
PMID:26205977 - Highly condensed chromatins are formed adjacent to subtelomeric and decondensed silent chromatin in fission yeast.
Matsuda A et al. Nat Commun 2015 Jul 24;6:7753
PMID:27334362 - Inner nuclear membrane protein Lem2 augments heterochromatin formation in response to nutritional conditions.
Tange Y et al. Genes Cells 2016 Aug;21(8):812-32
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:12193640 - Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.
Volpe TA et al. Science 2002 Sep 13;297(5588):1833-7
PMID:16734665 - RNA interference effector proteins localize to mobile cytoplasmic puncta in Schizosaccharomyces pombe.
Carmichael JB et al. Traffic 2006 Aug;7(8):1032-44
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:29214404 - The 19S proteasome regulates subtelomere silencing and facultative heterochromatin formation in fission yeast.
Seo HD et al. Curr Genet 2018 Jun;64(3):741-752
PMID:18345014 - Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin.
Zhang K et al. Nat Struct Mol Biol 2008 Apr;15(4):381-8
PMID:24013500 - A conserved ncRNA-binding protein recruits silencing factors to heterochromatin through an RNAi-independent mechanism.
Marina DB et al. Genes Dev 2013 Sep 01;27(17):1851-6
PMID:15218150 - RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteins.
Jia S et al. Science 2004 Jun 25;304(5679):1971-6
PMID:22268381 - The karyopherin Sal3 is required for nuclear import of the core RNA interference pathway protein Rdp1.
Park J et al. Traffic 2012 Apr;13(4):520-31
PMID:12482946 - Dicer is required for chromosome segregation and gene silencing in fission yeast cells.
Provost P et al. Proc Natl Acad Sci U S A 2002 Dec 24;99(26):16648-53
PMID:14699070 - ago1 and dcr1, two core components of the RNA interference pathway, functionally diverge from rdp1 in regulating cell cycle events in Schizosaccharomyces pombe.
Carmichael JB et al. Mol Biol Cell 2004 Mar;15(3):1425-35
PMID:28199302 - Untimely expression of gametogenic genes in vegetative cells causes uniparental disomy.
Folco HD et al. Nature 2017 Mar 02;543(7643):126-130
PMID:39786922 - The fission yeast SUMO-targeted ubiquitin ligase Slx8 functionally associates with clustered centromeres and the silent mating-type region at the nuclear periphery.
Chakraborty S et al. Biol Open 2024 Dec 15;13(12)
PMID:28648780 - The Histone Acetyltransferase Mst2 Protects Active Chromatin from Epigenetic Silencing by Acetylating the Ubiquitin Ligase Brl1.
Flury V et al. Mol Cell 2017 Jul 20;67(2):294-307.e9
PMID:14704433 - RNAi-mediated targeting of heterochromatin by the RITS complex.
Verdel A et al. Science 2004 Jan 30;303(5658):672-6
PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PMID:15372076 - A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.
Sadaie M et al. EMBO J 2004 Oct 01;23(19):3825-35
PMID:22733737 - Ers1 links HP1 to RNAi.
Rougemaille M et al. Proc Natl Acad Sci U S A 2012 Jul 10;109(28):11258-63
PMID:33511417 - Repression of a large number of genes requires interplay between homologous recombination and HIRA.
Misova I et al. Nucleic Acids Res 2021 Feb 26;49(4):1914-1934
PMID:24493644 - lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast.
Shah S et al. Genes Dev 2014 Feb 01;28(3):231-44
GO_REF:0000002 - Comments
PMID:20211136 - Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.
Bayne EH et al. Cell 2010 Mar 05;140(5):666-77
PMID:38048463 - Rex1BD and the 14-3-3 protein control heterochromatin organization at tandem repeats by linking RNAi and HDAC.
Gao J et al. Proc Natl Acad Sci U S A 2023 Dec 12;120(50):e2309359120
PMID:26443059 - Sgf73, a subunit of SAGA complex, is required for the assembly of RITS complex in fission yeast.
Deng X et al. Sci Rep 2015 Oct 07;5:14707
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:21892171 - Defects in RNA quality control factors reveal RNAi-independent nucleation of heterochromatin.
Reyes-Turcu FE et al. Nat Struct Mol Biol 2011 Sep 04;18(10):1132-8
PMID:16797182 - Conserved ribonuclease, Eri1, negatively regulates heterochromatin assembly in fission yeast.
Iida T et al. Curr Biol 2006 Jul 25;16(14):1459-64
PMID:27738016 - RNA interference is essential for cellular quiescence.
Roche B et al. Science 2016 Nov 11;354(6313)
PMID:17948055 - The JmjC domain protein Epe1 prevents unregulated assembly and disassembly of heterochromatin.
Trewick SC et al. EMBO J 2007 Nov 14;26(22):4670-82
PMID:18818364 - Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.
Roguev A et al. Science 2008 Oct 17;322(5900):405-10
PMID:24462781 - RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe.
Smialowska A et al. Biochem Biophys Res Commun 2014 Feb 07;444(2):254-9
PMID:18948543 - Splicing factors facilitate RNAi-directed silencing in fission yeast.
Bayne EH et al. Science 2008 Oct 24;322(5901):602-6
PMID:33260998 - High-Throughput Flow Cytometry Combined with Genetic Analysis Brings New Insights into the Understanding of Chromatin Regulation of Cellular Quiescence.
Zahedi Y et al. Int J Mol Sci 2020 Nov 27;21(23)
PMID:21151114 - Dicer associates with chromatin to repress genome activity in Schizosaccharomyces pombe.
Woolcock KJ et al. Nat Struct Mol Biol 2011 Jan;18(1):94-9
PMID:24957674 - Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts.
Anver S et al. EMBO Rep 2014 Aug;15(8):894-902
PMID:28541282 - Tailing and degradation of Argonaute-bound small RNAs protect the genome from uncontrolled RNAi.
Pisacane P et al. Nat Commun 2017 May 25;8:15332
PMID:23966866 - Mediator directs co-transcriptional heterochromatin assembly by RNA interference-dependent and -independent pathways.
Oya E et al. PLoS Genet 2013;9(8):e1003677
PMID:15947136 - RNA polymerase II is required for RNAi-dependent heterochromatin assembly.
Kato H et al. Science 2005 Jul 15;309(5733):467-9
PMID:29914874 - Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast.
Atkinson SR et al. RNA 2018 Sep;24(9):1195-1213
PMID:30824696 - Systematic analysis reveals the prevalence and principles of bypassable gene essentiality.
Li J et al. Nat Commun 2019 Mar 01;10(1):1002
PMID:33378674 - The INO80 Complex Regulates Epigenetic Inheritance of Heterochromatin.
Shan CM et al. Cell Rep 2020 Dec 29;33(13):108561
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:35908934 - Euchromatin factors HULC and Set1C affect heterochromatin organization and mating-type switching in fission yeast Schizosaccharomyces pombe.
Esquivel-Chávez A et al. Genes Genet Syst 2022 Oct 18;97(3):123-138
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:20018856 - Involvement of the spliceosomal U4 small nuclear RNA in heterochromatic gene silencing at fission yeast centromeres.
Chinen M et al. J Biol Chem 2010 Feb 19;285(8):5630-8
PMID:20062003 - Hairpin RNA induces secondary small interfering RNA synthesis and silencing in trans in fission yeast.
Simmer F et al. EMBO Rep 2010 Feb;11(2):112-8
PMID:28784663 - The 19S proteasome is directly involved in the regulation of heterochromatin spreading in fission yeast.
Seo HD et al. J Biol Chem 2017 Oct 13;292(41):17144-17155
PMID:26804021 - Shugoshin forms a specialized chromatin domain at subtelomeres that regulates transcription and replication timing.
Tashiro S et al. Nat Commun 2016 Jan 25;7:10393
PMID:19883398 - The Kinesin motor protein Cut7 regulates biogenesis and function of Ago1-complexes.
Stoica C et al. Traffic 2010 Jan;11(1):25-36
PMID:15475954 - RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing.
Noma K et al. Nat Genet 2004 Nov;36(11):1174-80
PMID:21847092 - An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer.
Barraud P et al. EMBO J 2011 Aug 16;30(20):4223-35
PMID:32499408 - The molecular chaperone Hsp90 regulates heterochromatin assembly through stabilizing multiple complexes in fission yeast.
Sun L et al. J Cell Sci 2020 Jul 07;133(13)
PMID:25274039 - A systematic genetic screen identifies new factors influencing centromeric heterochromatin integrity in fission yeast.
Bayne EH et al. Genome Biol 2014;15(10):481
PMID:21253571 - H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases.
Hansen KR et al. PLoS Genet 2011 Jan 06;7(1):e1001268
PMID:22895252 - A novel RNAi protein, Dsh1, assembles RNAi machinery on chromatin to amplify heterochromatic siRNA.
Kawakami K et al. Genes Dev 2012 Aug 15;26(16):1811-24
PMID:34010645 - The histone H3K9M mutation synergizes with H3K14 ubiquitylation to selectively sequester histone H3K9 methyltransferase Clr4 at heterochromatin.
Shan CM et al. Cell Rep 2021 May 18;35(7):109137
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:24240238 - Elimination of shelterin components bypasses RNAi for pericentric heterochromatin assembly.
Tadeo X et al. Genes Dev 2013 Nov 15;27(22):2489-99
PMID:29975684 - Bases of antisense lncRNA-associated regulation of gene expression in fission yeast.
Wery M et al. PLoS Genet 2018 Jul;14(7):e1007465
PMID:17981703 - Involvement of Dcr1 in post-transcriptional regulation of gene expression in Schizosaccharomyces pombe.
Gobeil LA et al. Front Biosci 2008 Jan 01;13:2203-15
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:25543137 - Dicer and Hsp104 function in a negative feedback loop to confer robustness to environmental stress.
Oberti D et al. Cell Rep 2015 Jan 06;10(1):47-61
PMID:39358553 - Ageing-associated long non-coding RNA extends lifespan and reduces translation in non-dividing cells.
Anver S et al. EMBO Rep 2024 Oct 02;
PMID:18665268 - Mitochondrial dysfunction increases oxidative stress and decreases chronological life span in fission yeast.
Zuin A et al. PLoS One 2008 Jul 30;3(7):e2842
PMID:22474355 - Heterochromatin protein 1 homologue Swi6 acts in concert with Ers1 to regulate RNAi-directed heterochromatin assembly.
Hayashi A et al. Proc Natl Acad Sci U S A 2012 Apr 17;109(16):6159-64
PMID:16246721 - The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast.
Yamada T et al. Mol Cell 2005 Oct 28;20(2):173-85
PMID:21725325 - Coordination of DNA replication and histone modification by the Rik1-Dos2 complex.
Li F et al. Nature 2011 Jul 03;475(7355):244-8
PMID:32101745 - Dense Transposon Integration Reveals Essential Cleavage and Polyadenylation Factors Promote Heterochromatin Formation.
Lee SY et al. Cell Rep 2020 Feb 25;30(8):2686-2698.e8
PMID:17380189 - Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function.
Murakami H et al. PLoS One 2007 Mar 21;2(3):e317
PMID:40132111 - A fission yeast CENP-B homologue Abp1 prevents RNAi-mediated heterochromatin formation at ribosomal DNA repeats.
Tsunemine S et al. Genetics 2025 Mar 25;
PMID:21289066 - Elimination of a specific histone H3K14 acetyltransferase complex bypasses the RNAi pathway to regulate pericentric heterochromatin functions.
Reddy BD et al. Genes Dev 2011 Feb 01;25(3):214-9
PMID:41316862 - Deletion of Elongator Protein 1 (Elp1) relieves heterochromatin defects in a Pol II mutant of Schizosaccharomyces pombe.
Nirmal MB et al. Genetics 2025 Nov 29;
PMID:40063661 - Fission yeast Caprin protein is required for efficient heterochromatin establishment.
Zhang H et al. PLoS Genet 2025 Mar 10;21(3):e1011620
PMID:23572080 - Distinct roles for Sir2 and RNAi in centromeric heterochromatin nucleation, spreading and maintenance.
Buscaino A et al. EMBO J 2013 May 02;32(9):1250-64
PMID:35194019 - Dicer promotes genome stability via the bromodomain transcriptional co-activator BRD4.
Gutbrod MJ et al. Nat Commun 2022 Feb 22;13(1):1001
PMID:25428589 - Long non-coding RNA-mediated transcriptional interference of a permease gene confers drug tolerance in fission yeast.
Ard R et al. Nat Commun 2014 Nov 27;5:5576
PMID:38479839 - Coordination of histone chaperones for parental histone segregation and epigenetic inheritance.
Fang Y et al. Genes Dev 2024 Mar 13;
PMID:23771057 - Sir2 is required for Clr4 to initiate centromeric heterochromatin assembly in fission yeast.
Alper BJ et al. EMBO J 2013 Aug 28;32(17):2321-35
PMID:30652128 - Heterochromatin suppresses gross chromosomal rearrangements at centromeres by repressing Tfs1/TFIIS-dependent transcription.
Okita AK et al. Commun Biol 2019;2:17
PMID:15907173 - Expression and purification of the carboxyl terminus domain of Schizosaccharomyces pombe dicer in Escherichia coli.
Qian Z et al. Protein Pept Lett 2005 May;12(4):311-4
PMID:15632061 - Global effects on gene expression in fission yeast by silencing and RNA interference machineries.
Hansen KR et al. Mol Cell Biol 2005 Jan;25(2):590-601
PMID:16407326 - Evolutionary-conserved telomere-linked helicase genes of fission yeast are repressed by silencing factors, RNAi components and the telomere-binding protein Taz1.
Hansen KR et al. Nucleic Acids Res 2006;34(1):78-88
PMID:15908586 - The CHD remodeling factor Hrp1 stimulates CENP-A loading to centromeres.
Walfridsson J et al. Nucleic Acids Res 2005;33(9):2868-79
PMID:19136623 - Phosphorylation of Swi6/HP1 regulates transcriptional gene silencing at heterochromatin.
Shimada A et al. Genes Dev 2009 Jan 01;23(1):18-23
PMID:28231281 - The intron in centromeric noncoding RNA facilitates RNAi-mediated formation of heterochromatin.
Mutazono M et al. PLoS Genet 2017 Feb;13(2):e1006606
PMID:29237752 - Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi.
Kajitani T et al. Proc Natl Acad Sci U S A 2017 Dec 26;114(52):E11208-E11217
PMID:30089114 - Heterochromatin and RNAi regulate centromeres by protecting CENP-A from ubiquitin-mediated degradation.
Yang J et al. PLoS Genet 2018 Aug;14(8):e1007572
PMID:26889830 - A Novel Epigenetic Silencing Pathway Involving the Highly Conserved 5'-3' Exoribonuclease Dhp1/Rat1/Xrn2 in Schizosaccharomyces pombe.
Tucker JF et al. PLoS Genet 2016 Feb;12(2):e1005873
PMID:22144463 - RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation.
Zofall M et al. Science 2012 Jan 06;335(6064):96-100
PMID:22683269 - HP1(Swi6) mediates the recognition and destruction of heterochromatic RNA transcripts.
Keller C et al. Mol Cell 2012 Jul 27;47(2):215-27
PMID:17512405 - RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing.
Bühler M et al. Cell 2007 May 18;129(4):707-21
PMID:25245948 - Tls1 regulates splicing of shelterin components to control telomeric heterochromatin assembly and telomere length.
Wang J et al. Nucleic Acids Res 2014 Oct;42(18):11419-32
PMID:15607976 - Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.
Motamedi MR et al. Cell 2004 Dec 17;119(6):789-802
PMID:22522705 - Mmi1 RNA surveillance machinery directs RNAi complex RITS to specific meiotic genes in fission yeast.
Hiriart E et al. EMBO J 2012 May 16;31(10):2296-308
PMID:22319459 - Raf1 Is a DCAF for the Rik1 DDB1-like protein and has separable roles in siRNA generation and chromatin modification.
Buscaino A et al. PLoS Genet 2012 Feb;8(2):e1002499
PMID:15743828 - RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast.
Petrie VJ et al. Mol Cell Biol 2005 Mar;25(6):2331-46
PMID:18931302 - Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes.
Dixon SJ et al. Proc Natl Acad Sci U S A 2008 Oct 28;105(43):16653-8