PomBase home

protein coding gene - cob1-I1 (SPMIT.06) - mitochondrial DNA binding endonuclease (intron encoded)

Gene summary

Standard name
cob1-I1
Systematic ID
SPMIT.06
Product
mitochondrial DNA binding endonuclease (intron encoded)
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
P05511
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome Mitochondrial: 10859..13282 forward strand

Annotation

GO biological process

GO:0006315 - homing of group II introns

References:

GO:0090615 - mitochondrial mRNA processing

References:

GO cellular component

GO:0000262 - mitochondrial chromosome

References:

GO molecular function

GO:0003677 - DNA binding

References:

GO:0004519 - endonuclease activity

References:

Genome organisation

PBO:0005886 - protein in cob intron

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

References:

Quantitative gene expression

PBO:0011963 - RNA level

References:

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011064 - conserved in fungi

Protein features

IDNameInterPro nameDB name
PF00078RVT_1RT_domPfam
PF01348Intron_maturas2Domain_XPfam
PF21368AI2M-like_HNHAI2M-like_HNHPfam
cd00085HNHcHNH_nucCDD
cd01651RT_G2_intronCDD
PS50878RT_POLRT_domPROSITE profiles
SM00507HNHcHNH_nucSMART
SSF56672DNA/RNA_pol_sfSUPERFAMILY
PTHR34047GrpII_Intron_Splice-Mob/DefPANTHER

Orthologs

References / Literature

PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
GO_REF:0000024 - Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity.
PMID:31364709 - Intraspecific Diversity of Fission Yeast Mitochondrial Genomes.
Tao YT et al. Genome Biol Evol 2019 Aug 01;11(8):2312-2329
GO_REF:0000111 - Gene Ontology annotations Inferred by Curator (IC) using at least one Inferred by Sequence Similarity (ISS) annotation to support the inference
PMID:12161753 - The transcriptional program of meiosis and sporulation in fission yeast.
Mata J et al. Nat Genet 2002 Sep;32(1):143-7