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lncRNA gene - SPNCRNA.1234 - non-coding RNA

Gene summary

Systematic ID
SPNCRNA.1234
Product
non-coding RNA
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
prl10, SPNCRNA.10, nmt1-antisense-1
Feature type
lncRNA gene
Genomic location
chromosome III: 1837499..1840092 reverse strand

Annotation

Qualitative gene expression

PomGeneEx:0000012 - RNA level decreased

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Quantitative gene expression

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0009007 - decreased vegetative cell population viability

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FYPO:0009008 - increased vegetative cell population viability

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Genotypes:

FYPO:0009030 - resistance to amitrole

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FYPO:0000067 - resistance to brefeldin A

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FYPO:0001034 - resistance to tunicamycin

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FYPO:0001097 - sensitive to amitrole

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FYPO:0000440 - sensitive to antimycin A

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FYPO:0000095 - sensitive to bleomycin

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FYPO:0000099 - sensitive to canavanine

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FYPO:0002705 - sensitive to methionine

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FYPO:0001457 - sensitive to tunicamycin

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Warnings

PBO:0010241 - gene merge, prl10 was a subsequence of SPNCRNA.1234

References / Literature

PMID:12597277 - Abundant poly(A)-bearing RNAs that lack open reading frames in Schizosaccharomyces pombe.
Watanabe T et al. DNA Res 2002 Dec 31;9(6):209-15
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:34984977 - Functional profiling of long intergenic non-coding RNAs in fission yeast.
Rodriguez-Lopez M et al. Elife 2022 Jan 05;11
PMID:29914874 - Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast.
Atkinson SR et al. RNA 2018 Sep;24(9):1195-1213
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101