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lncRNA gene - ter1 (SPNCRNA.214) - telomerase RNA

Gene summary

Standard name
ter1
Systematic ID
SPNCRNA.214
Product
telomerase RNA
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
SPNG585, SPNCRNA.884
Feature type
lncRNA gene
Genomic location
chromosome I: 3084610..3086022 reverse strand

Annotation

Comment

PBO:0007356 - RNA trimethylguanosine capped

References:

Disease association

MONDO:0007485 - dyskeratosis congenita, autosomal dominant 1

References:

MONDO:0013879 - pulmonary fibrosis and/or bone marrow failure, Telomere-related, 2

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MONDO:0100137 - telomere syndrome

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GO biological process

GO:0007004 - telomere maintenance via telomerase

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GO cellular component

GO:0005634 - nucleus

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GO:0000333 - telomerase catalytic core complex

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GO molecular function

GO:0005515 - protein binding

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GO:0000332 - template for synthesis of G-rich strand of telomere DNA activity

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Modification

MOD:00427 - methylated residue

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Multi-locus phenotype

FYPO:0001053 - cut, normal size cell

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Genotypes:

FYPO:0003803 - decreased protein localization to telomere

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Genotypes:

FYPO:0002134 - decreased protein-RNA interaction

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Genotypes:

FYPO:0005540 - decreased telomerase RNA reverse transcriptase activity

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Genotypes:

FYPO:0007419 - decreased telomere tethering at nuclear periphery during G0

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Genotypes:

FYPO:0004085 - decreased vegetative cell growth

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Genotypes:

FYPO:0005407 - increased DNA recombination at telomere during nitrogen starvation

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Genotypes:

FYPO:0001890 - increased RNA level

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Genotypes:

FYPO:0006507 - increased subtelomeric DNA amplification during G0

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Genotypes:

FYPO:0007421 - increased transcription at telomere during G0

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Genotypes:

FYPO:0002908 - increased transcription at telomere during vegetative growth

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Genotypes:

FYPO:0006518 - loss of viability in G0

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Genotypes:

FYPO:0002357 - normal protein-RNA interaction

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Genotypes:

FYPO:0002687 - normal telomere length during vegetative growth

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Genotypes:

FYPO:0003107 - progressively shortening telomeres during vegetative growth

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Genotypes:

FYPO:0006511 - shortened telomeres during G0

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Genotypes:

FYPO:0002239 - shortened telomeres during vegetative growth

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Genotypes:

FYPO:0003106 - stable shortened telomeres during vegetative growth

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Genotypes:

FYPO:0001888 - substance absent from cell

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Genotypes:

FYPO:0007414 - subtelomere expansion during G0

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Genotypes:

FYPO:0005404 - telomeric regions absent from linear chromosomes

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Genotypes:

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

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Quantitative gene expression

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0002955 - abnormal G0 to G1 transition

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Genotypes:

FYPO:0007394 - abnormal RNA structure

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Genotypes:

FYPO:0005542 - abnormal telomerase template activity

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Genotypes:

FYPO:0004914 - abnormal telomeric repeat sequence

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Genotypes:

FYPO:0000705 - abolished protein-protein interaction

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Genotypes:

FYPO:0002702 - circularized chromosome

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Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

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Genotypes:

FYPO:0000835 - decreased protein level

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Genotypes:

FYPO:0003803 - decreased protein localization to telomere

References:

Genotypes:

FYPO:0001645 - decreased protein-protein interaction

References:

Genotypes:

FYPO:0002134 - decreased protein-RNA interaction

References:

Genotypes:

FYPO:0005540 - decreased telomerase RNA reverse transcriptase activity

References:

Genotypes:

FYPO:0007419 - decreased telomere tethering at nuclear periphery during G0

References:

Genotypes:

FYPO:0002980 - increased chromatin binding

References:

Genotypes:

FYPO:0004656 - increased protein localization to telomere during vegetative growth

References:

Genotypes:

FYPO:0002945 - increased RNA level during G0

References:

Genotypes:

FYPO:0006507 - increased subtelomeric DNA amplification during G0

References:

Genotypes:

FYPO:0005541 - normal DNA recombination frequency at subtelomeric heterochromatin

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Genotypes:

FYPO:0007269 - normal interphase mitotic telomere clustering during vegetative growth

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Genotypes:

FYPO:0004083 - normal protein level

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Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

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Genotypes:

FYPO:0002887 - normal protein localization to telomere during vegetative growth

References:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

References:

Genotypes:

FYPO:0002357 - normal protein-RNA interaction

References:

Genotypes:

FYPO:0005536 - normal RNA localization to nucleus

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Genotypes:

FYPO:0005537 - normal telomerase holoenzyme complex assembly

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Genotypes:

FYPO:0002687 - normal telomere length during vegetative growth

References:

Genotypes:

FYPO:0005538 - normal telomere-telomerase complex assembly

References:

Genotypes:

FYPO:0004915 - normal telomeric repeat sequence

References:

Genotypes:

FYPO:0003107 - progressively shortening telomeres during vegetative growth

References:

Genotypes:

FYPO:0002239 - shortened telomeres during vegetative growth

References:

Genotypes:

FYPO:0003106 - stable shortened telomeres during vegetative growth

References:

Genotypes:

FYPO:0007414 - subtelomere expansion during G0

References:

Genotypes:

FYPO:0005404 - telomeric regions absent from linear chromosomes

References:

Genotypes:

Orthologs

References / Literature

PMID:26305931 - Telomerase RNA stem terminus element affects template boundary element function, telomere sequence, and shelterin binding.
Webb CJ et al. Proc Natl Acad Sci U S A 2015 Sep 08;112(36):11312-7
PB_REF:0000003 - Disease Association Curation
PMID:29167439 - Eroded telomeres are rearranged in quiescent fission yeast cells through duplications of subtelomeric sequences.
Maestroni L et al. Nat Commun 2017 Nov 22;8(1):1684
PMID:29784772 - A Heterochromatin Domain Forms Gradually at a New Telomere and Is Dynamic at Stable Telomeres.
Wang J et al. Mol Cell Biol 2018 Aug 01;38(15)
PMID:23022480 - Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3'-to-5' RNA exonuclease processing U6 small nuclear RNA.
Shchepachev V et al. Cell Rep 2012 Oct 25;2(4):855-65
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:29216371 - Fission yeast Ccq1 is a modulator of telomerase activity.
Armstrong CA et al. Nucleic Acids Res 2018 Jan 25;46(2):704-716
PMID:33378677 - Quality-Control Mechanism for Telomerase RNA Folding in the Cell.
Hu X et al. Cell Rep 2020 Dec 29;33(13):108568
PMID:22354040 - RPA facilitates telomerase activity at chromosome ends in budding and fission yeasts.
Luciano P et al. EMBO J 2012 Apr 18;31(8):2034-46
PMID:22101932 - Tel1ATM and Rad3ATR kinases promote Ccq1-Est1 interaction to maintain telomeres in fission yeast.
Moser BA et al. Nat Struct Mol Biol 2011 Nov 20;18(12):1408-13
PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:24210919 - Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.
Lee NN et al. Cell 2013 Nov 21;155(5):1061-74
PMID:29422503 - LARP7-like protein Pof8 regulates telomerase assembly and poly(A)+TERRA expression in fission yeast.
Mennie AK et al. Nat Commun 2018 Feb 08;9(1):586
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:35277511 - The methyl phosphate capping enzyme Bmc1/Bin3 is a stable component of the fission yeast telomerase holoenzyme.
Porat J et al. Nat Commun 2022 Mar 11;13(1):1277
PMID:18157149 - Identification and characterization of the Schizosaccharomyces pombe TER1 telomerase RNA.
Webb CJ et al. Nat Struct Mol Biol 2008 Jan;15(1):34-42
PMID:22215813 - Schizosaccharomyces pombe Ccq1 and TER1 bind the 14-3-3-like domain of Est1, which promotes and stabilizes telomerase-telomere association.
Webb CJ et al. Genes Dev 2012 Jan 01;26(1):82-91
PMID:29422501 - LARP7 family proteins have conserved function in telomerase assembly.
Collopy LC et al. Nat Commun 2018 Feb 08;9(1):557
PMID:29422664 - Pof8 is a La-related protein and a constitutive component of telomerase in fission yeast.
Páez-Moscoso DJ et al. Nat Commun 2018 Feb 08;9(1):587
PMID:22446625 - Telomerase RNA biogenesis involves sequential binding by Sm and Lsm complexes.
Tang W et al. Nature 2012 Mar 25;484(7393):260-4
PMID:22302936 - Tel1(ATM) and Rad3(ATR) phosphorylate the telomere protein Ccq1 to recruit telomerase and elongate telomeres in fission yeast.
Yamazaki H et al. Genes Dev 2012 Feb 01;26(3):241-6
PMID:25131669 - Telomerase activation after recruitment in fission yeast.
Armstrong CA et al. Curr Biol 2014 Sep 08;24(17):2006-11
PMID:29914874 - Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast.
Atkinson SR et al. RNA 2018 Sep;24(9):1195-1213
PMID:18157152 - TER1, the RNA subunit of fission yeast telomerase.
Leonardi J et al. Nat Struct Mol Biol 2008 Jan;15(1):26-33
PMID:31980821 - Nuclear envelope attachment of telomeres limits TERRA and telomeric rearrangements in quiescent fission yeast cells.
Maestroni L et al. Nucleic Acids Res 2020 Apr 06;48(6):3029-3041
PMID:19052544 - Spliceosomal cleavage generates the 3' end of telomerase RNA.
Box JA et al. Nature 2008 Dec 18;456(7224):910-4
PMID:24793650 - Structural basis for protein-RNA recognition in telomerase.
Huang J et al. Nat Struct Mol Biol 2014 Jun;21(6):507-12