PomBase home

Haploid genotype - clr3delta

Genotype summary

Description
clr3delta
Organism
Schizosaccharomyces pombe (fission yeast)

Allele summary

gene Product Allele name Description Type Expression
clr3 (SPBC800.03)SHREC complex histone deacetylase (class II) subunit, Clr3clr3deltadeletiondeletionNull

Annotation

Single locus phenotype

FYPO:0003659 - abnormal mating type switching resulting in duplication or deletion in mating-type region

References:

Genes:

FYPO:0000357 - abnormal shmoo morphology

References:

Genes:

FYPO:0004065 - abnormal transcription elongation from RNA polymerase II promoter

References:

Genes:

FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

References:

Genes:

FYPO:0007376 - abolished epigenetic heterochromatin inheritance

References:

Genes:

FYPO:0005844 - abolished histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

References:

Genes:

FYPO:0005850 - abolished protein localization to heterochromatin at centromere outer repeat

References:

Genes:

FYPO:0003743 - decreased cell population growth during glucose starvation

References:

Genes:

FYPO:0009053 - decreased cell population growth on glutamate nitrogen source

References:

Genes:

FYPO:0009092 - decreased cell population growth on lysine and serine nitrogen source

References:

Genes:

FYPO:0009099 - decreased cell population growth on mannitol carbon source

References:

Genes:

FYPO:0003094 - decreased centromeric outer repeat transcript level

References:

Genes:

FYPO:0002834 - decreased chromatin silencing at centromere

References:

Genes:

FYPO:0003217 - decreased chromatin silencing at centromere central core

References:

Genes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

Genes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genes:

FYPO:0003216 - decreased chromatin silencing at rDNA

References:

Genes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genes:

FYPO:0003352 - decreased DNA double-strand break formation at mating-type locus

References:

Genes:

FYPO:0007009 - decreased heterochromatin assembly by small RNA

References:

Genes:

FYPO:0010068 - decreased histone H3-K14 ubiquitination at pericentric heterochromatin during vegetative growth

References:

Genes:

FYPO:0010072 - decreased histone H3-K14 ubiquitination at silent mating-type cassette cenH region during vegetative growth

References:

Genes:

FYPO:0010069 - decreased histone H3-K14 ubiquitination at silent mating-type cassette heterochromatin during vegetative growth

References:

Genes:

FYPO:0000877 - decreased histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genes:

FYPO:0000883 - decreased histone H3-K9 trimethylation at centromere during vegetative growth

References:

Genes:

FYPO:0010073 - decreased histone H3-K9 trimethylation at silent mating-type cassette cenH region during vegetative growth

References:

Genes:

FYPO:0005845 - decreased histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

References:

Genes:

FYPO:0000708 - decreased mating efficiency

References:

Genes:

FYPO:0000470 - decreased mating type switching

References:

Genes:

FYPO:0005931 - decreased nucleosome occupancy at silent mating-type cassette

References:

Genes:

FYPO:0005516 - decreased nucleosome occupancy in euchromatin

References:

Genes:

FYPO:0002842 - decreased protein localization to centromere outer repeat

References:

Genes:

FYPO:0006599 - decreased protein localization to centromeric chromatin during vegetative growth

References:

Genes:

FYPO:0005154 - decreased protein localization to heterochromatin at mat2P silent mating-type cassette

References:

Genes:

FYPO:0003573 - decreased protein localization to heterochromatin at silent mating-type cassette

References:

Genes:

FYPO:0004167 - increased cell population growth on glycerol carbon source

References:

Genes:

FYPO:0009072 - increased cell population growth on lysine nitrogen source

References:

Genes:

FYPO:0007339 - increased cen-dg RNA level

References:

Genes:

FYPO:0000220 - increased centromeric outer repeat transcript level

References:

Genes:

FYPO:0002836 - increased centromeric outer repeat transcript-derived siRNA level

References:

Genes:

FYPO:0005522 - increased forward centromeric outer repeat transcript level

References:

Genes:

FYPO:0006548 - increased gene expression

References:

Genes:

FYPO:0008416 - increased histone exchange at silent mating-type cassette during vegetative growth

References:

Genes:

FYPO:0010012 - increased histone H2B-K33 acetylation during vegetative growth

References:

Genes:

FYPO:0000966 - increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth

References:

Genes:

FYPO:0005518 - increased histone H3-K14 acetylation at protein coding gene during vegetative growth

References:

Genes:

FYPO:0007634 - increased histone H3-K14 acetylation at rDNA during vegetative growth

References:

Genes:

FYPO:0007633 - increased histone H3-K14 acetylation at silent mating-type cassette during vegetative growth

References:

Genes:

FYPO:0005310 - increased histone H3-K14 acetylation during vegetative growth

References:

Genes:

FYPO:0002369 - increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth

References:

Genes:

FYPO:0006681 - increased histone H3-K9 acetylation at centromere inner repeat during vegetative growth

References:

Genes:

FYPO:0006814 - increased histone H3-K9 acetylation at centromere outer repeat during vegetative growth

References:

Genes:

FYPO:0007630 - increased histone H3-K9 acetylation at rDNA during vegetative growth

References:

Genes:

FYPO:0004690 - increased histone H3-K9 acetylation at silent mating-type cassette during vegetative growth

References:

Genes:

FYPO:0008158 - increased histone H3-S10 phosphorylation at the silent mating-type locus during vegetative growth

References:

Genes:

FYPO:0007310 - increased histone H4-K12 acetylation at centromere outer repeat during vegetative growth

References:

Genes:

FYPO:0007311 - increased histone H4-K16 acetylation at centromere outer repeat during vegetative growth

References:

Genes:

FYPO:0007635 - increased histone H4-K16 acetylation at protein coding gene during vegetative growth

References:

Genes:

FYPO:0007309 - increased histone H4-K8 acetylation at centromere outer repeat during vegetative growth

References:

Genes:

FYPO:0003009 - increased protein localization to centromere outer repeat

References:

Genes:

FYPO:0007279 - increased protein localization to euchromatin

References:

Genes:

FYPO:0006300 - increased protein localization to heterochromatin at centromere inner repeat

References:

Genes:

FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

References:

Genes:

FYPO:0004377 - increased protein localization to heterochromatin at silent mating-type cassette

References:

Genes:

FYPO:0010074 - increased protein localization to heterochromatin at silent mating-type cassette cenH region

References:

Genes:

FYPO:0004380 - increased protein localization to pericentric heterochromatin during vegetative growth

References:

Genes:

FYPO:0005523 - increased reverse centromeric outer repeat transcript level

References:

Genes:

FYPO:0000825 - increased RNA level during vegetative growth

References:

Genes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

References:

Genes:

FYPO:0000245 - loss of viability in stationary phase

References:

Genes:

FYPO:0002567 - normal centromeric outer repeat transcript level

References:

Genes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

References:

Genes:

FYPO:0006811 - normal gross chromosomal rearrangement frequency

References:

Genes:

FYPO:0000962 - normal growth on hydrogen peroxide

References:

Genes:

FYPO:0000963 - normal growth on hydroxyurea

References:

Genes:

FYPO:0000957 - normal growth on methyl methanesulfonate

References:

Genes:

FYPO:0000964 - normal growth on thiabendazole

References:

Genes:

FYPO:0007529 - normal histone H3-K9 dimethylation at heterochromatin island during vegetative growth

References:

Genes:

FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genes:

FYPO:0000856 - normal nucleosome positioning

References:

Genes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

References:

Genes:

FYPO:0003576 - normal protein localization to subtelomeric heterochromatin

References:

Genes:

FYPO:0001317 - normal RNA level during vegetative growth

References:

Genes:

FYPO:0005527 - normal subtelomeric chromatin knob formation

References:

Genes:

FYPO:0002687 - normal telomere length during vegetative growth

References:

Genes:

FYPO:0003503 - normal vegetative cell length

References:

Genes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genes:

FYPO:0009036 - resistance to benzamidine

References:

Genes:

FYPO:0000067 - resistance to brefeldin A

References:

Genes:

FYPO:0000073 - resistance to caffeine

References:

Genes:

FYPO:0000764 - resistance to cycloheximide

References:

Genes:

FYPO:0009038 - resistance to egtazic acid

References:

Genes:

FYPO:0001583 - resistance to lithium

References:

Genes:

FYPO:0009083 - resistance to lithium chloride and methyl methanesulfonate

References:

Genes:

FYPO:0009085 - resistance to lithium chloride and sodium dodecyl sulfate

References:

Genes:

FYPO:0005969 - resistance to magnesium chloride

References:

Genes:

FYPO:0009087 - resistance to magnesium chloride and sodium dodecyl sulfate

References:

Genes:

FYPO:0003383 - resistance to tert-butyl hydroperoxide

References:

Genes:

FYPO:0001034 - resistance to tunicamycin

References:

Genes:

FYPO:0000830 - resistance to vanadate

References:

Genes:

FYPO:0007933 - sensitive to 2,2′-dipyridyl

References:

Genes:

FYPO:0004325 - sensitive to 5-fluorouracil

References:

Genes:

FYPO:0000084 - sensitive to 6-azauracil

References:

Genes:

FYPO:0001097 - sensitive to amitrole

References:

Genes:

FYPO:0009067 - sensitive to amorolfine

References:

Genes:

FYPO:0000096 - sensitive to cadmium

References:

Genes:

FYPO:0000085 - sensitive to camptothecin

References:

Genes:

FYPO:0000104 - sensitive to cycloheximide

References:

Genes:

FYPO:0000799 - sensitive to diamide

References:

Genes:

FYPO:0000089 - sensitive to methyl methanesulfonate

References:

Genes:

FYPO:0007924 - sensitive to potassium chloride and sodium dodecyl sulfate

References:

Genes:

FYPO:0000086 - sensitive to tacrolimus

References:

Genes:

FYPO:0000022 - shmoo with long tip

References:

Genes:

FYPO:0002060 - viable vegetative cell population

References:

Genes:

FYPO:0002197 - viable vegetative cell with abnormal cell shape

References:

Genes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genes: