id: gomodel:66a3e0bb00001342
title: '''de novo'' L-methionine biosynthetic process (GO:0071266),  sulfate assimilation
  (GO:0000103), sulfite transmembrane  transport. (GO:0000316), sulfate import across
  plasma membrane (GO:1902434)'
taxon: NCBITaxon:4896
status: production
date_modified: '2026-05-28'
comments:
- 'Automated change 2026-02-26: GO:0019279 replaced by GO:0071266'
- 'Automated change 2026-02-26: GO:0019280 replaced by GO:0071266'
- 'Automated change 2026-05-28: GO:0019379 replaced by GO:0000103'
- https://www.nature.com/articles/s41598-019-48433-5
activities:
- id: gomodel:66a3e0bb00001342/66a3e0bb00001368
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:14723223
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2024-08-01'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000315
      reference: PMID:18388974
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2024-08-01'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000114738
      - UniProtKB:Q12555
      - SGD:S000003771
      - PomBase:SPBC27.08c
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2024-08-01'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2024-08-01'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPBC27.08c
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0004781
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0000303
      reference: GO_REF:0000051
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-03-21'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-03-21'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:18388974
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2024-08-01'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2024-08-01'
      provided_by:
      - http://www.pombase.org
    term: GO:0000103
  molecular_associations:
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:14723223
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2024-08-01'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000315
      reference: PMID:18388974
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2024-08-01'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000114738
      - UniProtKB:Q12555
      - SGD:S000003771
      - PomBase:SPBC27.08c
      provenances:
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        date: '2024-08-01'
        provided_by:
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    provenances:
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      date: '2024-08-01'
      provided_by:
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    predicate: RO:0002233
    molecule: gomodel:66a3e0bb00001342/66a3e0bb00001358
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000303
      reference: GO_REF:0000051
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2024-08-01'
        provided_by:
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    provenances:
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      date: '2024-08-01'
      provided_by:
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    predicate: RO:0002234
    molecule: gomodel:66a3e0bb00001342/66a3e0bb00001380
- id: gomodel:66a3e0bb00001342/67b1629100000425
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
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      - ZFIN:ZDB-GENE-030131-1566
      - UniProtKB:P50443
      - FB:FBgn0036770
      - MGI:MGI:2385894
      - RGD:620136
      - UniProtKB:A0A8V0Y720
      - PomBase:SPAC869.05c
      - UniProtKB:Q8TE54
      - UniProtKB:Q5B9Q0
      - MGI:MGI:2159728
      - MGI:MGI:892977
      - UniProtKB:Q96RN1
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      - WB:WBGene00017464
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      provenances:
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        date: '2025-02-17'
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      date: '2025-02-17'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPCC320.05
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0015116
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0000303
      reference: GO_REF:0000051
      provenances:
      - contributor:
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        date: '2025-02-17'
        provided_by:
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    provenances:
    - contributor:
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      date: '2025-02-17'
      provided_by:
      - http://www.pombase.org
    term: GO:0005886
  part_of:
    type: BiologicalProcessAssociation
    evidence:
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      reference: GO_REF:0000051
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-02-17'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-02-17'
      provided_by:
      - http://www.pombase.org
    term: GO:1902434
  molecular_associations:
  - type: MoleculeAssociation
    evidence:
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      reference: GO_REF:0000033
      with_objects:
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      - ZFIN:ZDB-GENE-030131-1566
      - UniProtKB:P50443
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      - RGD:620136
      - UniProtKB:A0A8V0Y720
      - PomBase:SPAC869.05c
      - UniProtKB:Q8TE54
      - UniProtKB:Q5B9Q0
      - MGI:MGI:2159728
      - MGI:MGI:892977
      - UniProtKB:Q96RN1
      - UniProtKB:Q9BXS9
      - SGD:S000004082
      - WB:WBGene00010788
      - WB:WBGene00017464
      - PomBase:SPBC3H7.02
      - SGD:S000000498
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-02-17'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-02-17'
      provided_by:
      - http://www.pombase.org
    predicate: RO:0002234
    molecule: gomodel:66a3e0bb00001342/66a3e0bb00001358
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000929279
      - ZFIN:ZDB-GENE-030131-1566
      - UniProtKB:P50443
      - FB:FBgn0036770
      - MGI:MGI:2385894
      - RGD:620136
      - UniProtKB:A0A8V0Y720
      - PomBase:SPAC869.05c
      - UniProtKB:Q8TE54
      - UniProtKB:Q5B9Q0
      - MGI:MGI:2159728
      - MGI:MGI:892977
      - UniProtKB:Q96RN1
      - UniProtKB:Q9BXS9
      - SGD:S000004082
      - WB:WBGene00010788
      - WB:WBGene00017464
      - PomBase:SPBC3H7.02
      - SGD:S000000498
      provenances:
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        date: '2025-02-17'
        provided_by:
        - http://www.pombase.org
    provenances:
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      - https://orcid.org/0000-0001-6330-7526
      date: '2025-02-17'
      provided_by:
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    predicate: RO:0002234
    molecule: gomodel:66a3e0bb00001342/66a3e0bb00001358
- id: gomodel:66a3e0bb00001342/66a3e0bb00001382
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000114732
      - UniProtKB:O43252
      - TAIR:locus:2140005
      - SGD:S000001484
      - UniProtKB:P9WNM5
      - TAIR:locus:2079379
      - MGI:MGI:1330587
      - MGI:MGI:1330223
      - TAIR:locus:2158626
      - UniProtKB:P0A6J1
      - TAIR:locus:2046901
      provenances:
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    provenances:
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      date: '2024-08-01'
      provided_by:
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    term: PomBase:SPAC1782.11
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0004020
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0007005
      reference: PMID:16823372
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2026-03-01'
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2026-03-01'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000114642
      - TAIR:locus:2046901
      - UniProtKB:Q92203
      - UniProtKB:O95340
      - MGI:MGI:1330223
      - SGD:S000001484
      - TAIR:locus:2140005
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      provenances:
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        date: '2024-08-01'
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      - https://orcid.org/0000-0001-6330-7526
      date: '2024-08-01'
      provided_by:
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    term: GO:0000103
  molecular_associations:
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000303
      reference: GO_REF:0000051
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2024-08-01'
        provided_by:
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      provided_by:
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    predicate: RO:0002234
    molecule: gomodel:66a3e0bb00001342/66a3e0bb00001393
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      with_objects:
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      - SGD:S000001484
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      - TAIR:locus:2079379
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      - UniProtKB:P0A6J1
      - TAIR:locus:2046901
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    molecule: gomodel:66a3e0bb00001342/66a3e0bb00001380
- id: gomodel:66a3e0bb00001342/66a3e0bb00001479
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000501
      reference: GO_REF:0000116
      with_objects:
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      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
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      date: '2024-08-01'
      provided_by:
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    term: PomBase:SPBC428.11
  molecular_function:
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    term: GO:0051009
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0007005
      reference: PMID:16823372
      provenances:
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      date: '2024-08-01'
      provided_by:
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    term: GO:0005829
  part_of:
    type: BiologicalProcessAssociation
    evidence:
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      reference: GO_REF:0000051
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
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    provenances:
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      - https://orcid.org/0000-0001-6330-7526
      date: '2024-08-01'
      provided_by:
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    term: GO:0071266
  molecular_associations:
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    evidence:
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      provenances:
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    predicate: RO:0002233
    molecule: gomodel:66a3e0bb00001342/66a3e0bb00001457
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    evidence: []
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      date: '2025-01-23'
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      - FB:FBgn0036770
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    term: GO:0005886
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    evidence:
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- id: gomodel:66a3e0bb00001342/66a3e0bb00001398
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      reference: GO_REF:0000051
      provenances:
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        provided_by:
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      provided_by:
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    term: PomBase:SPAC7D4.07c
  molecular_function:
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    term: GO:0009055
  occurs_in:
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    evidence:
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      reference: PMID:16823372
      provenances:
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      - http://www.pombase.org
    term: GO:0005829
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    term: GO:0005829
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    term: GO:0005829
- id: gomodel:66a3e0bb00001342/678073a900003247
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      - http://www.pombase.org
    term: GO:0005829
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      date: '2026-02-21'
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      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:66a3e0bb00001342/6994852c00002893
  term: CHEBI:58161
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      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:66a3e0bb00001342/66a3e0bb00001501
  term: CHEBI:16643
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    provenances:
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      - https://orcid.org/0000-0001-6330-7526
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      provided_by:
      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:66a3e0bb00001342/66a3e0bb00001488
  term: CHEBI:17588
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    type: CellularAnatomicalEntityAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-03-21'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:66a3e0bb00001342/66a3e0bb00001380
  term: CHEBI:58243
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      - https://orcid.org/0000-0001-6330-7526
      date: '2025-03-21'
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      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:66a3e0bb00001342/6994852c00002856
  term: CHEBI:16335
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    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2026-02-21'
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      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:66a3e0bb00001342/6994852c00002938
  term: CHEBI:35235
  located_in:
    type: CellularAnatomicalEntityAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2026-02-21'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
objects:
- id: GO:0015116
  label: sulfate transmembrane transporter activity
  type: gocam:Object
- id: PomBase:SPBC3H7.02
  label: sul1 Spom
  type: gocam:Object
- id: GO:0005886
  label: plasma membrane
  type: gocam:Object
- id: ECO:0000318
  label: biological aspect of ancestor evidence used in manual assertion
  type: gocam:Object
- id: CHEBI:16189
  label: sulfate
  type: gocam:Object
- id: ECO:0000303
  label: author statement without traceable support used in manual assertion
  type: gocam:Object
- id: PomBase:SPAC869.05c
  label: sul2 Spom
  type: gocam:Object
- id: GO:1902434
  label: sulfate import across plasma membrane
  type: gocam:Object
- id: ECO:0000305
  label: curator inference used in manual assertion
  type: gocam:Object
- id: GO:0004781
  label: sulfate adenylyltransferase (ATP) activity
  type: gocam:Object
- id: PomBase:SPBC27.08c
  label: sua1 Spom
  type: gocam:Object
- id: GO:0000103
  label: sulfate assimilation
  type: gocam:Object
- id: ECO:0000315
  label: mutant phenotype evidence used in manual assertion
  type: gocam:Object
- id: CHEBI:58243
  label: 5'-adenylyl sulfate(2-)
  type: gocam:Object
- id: GO:0004020
  label: adenylylsulfate kinase activity
  type: gocam:Object
- id: PomBase:SPAC1782.11
  label: met14 Spom
  type: gocam:Object
- id: GO:0004604
  label: phosphoadenylyl-sulfate reductase (thioredoxin) activity
  type: gocam:Object
- id: PomBase:SPAC13G7.06
  label: met16 Spom
  type: gocam:Object
- id: CHEBI:58339
  label: 3'-phosphonato-5'-adenylyl sulfate(4-)
  type: gocam:Object
- id: CHEBI:17359
  label: sulfite
  type: gocam:Object
- id: GO:0009055
  label: electron transfer activity
  type: gocam:Object
- id: PomBase:SPAC7D4.07c
  label: trx1 Spom
  type: gocam:Object
- id: GO:0005829
  label: cytosol
  type: gocam:Object
- id: ECO:0007005
  label: high throughput direct assay evidence used in manual assertion
  type: gocam:Object
- id: GO:0000319
  label: sulfite transmembrane transporter activity
  type: gocam:Object
- id: PomBase:SPBPB10D8.04c
  label: ssu1 Spom
  type: gocam:Object
- id: PomBase:SPBPB10D8.05c
  label: ssu2 Spom
  type: gocam:Object
- id: PomBase:SPBPB10D8.06c
  label: ssu3 Spom
  type: gocam:Object
- id: PomBase:SPBPB10D8.07c
  label: ssu4 Spom
  type: gocam:Object
- id: GO:0004783
  label: sulfite reductase (NADPH) activity
  type: gocam:Object
- id: PomBase:SPAC10F6.01c
  label: sir1 Spom
  type: gocam:Object
- id: PomBase:SPCC584.01c
  label: met10 Spom
  type: gocam:Object
- id: ECO:0000266
  label: sequence orthology evidence used in manual assertion
  type: gocam:Object
- id: CHEBI:16136
  label: hydrogen sulfide
  type: gocam:Object
- id: CHEBI:15138
  label: sulfide(2-)
  type: gocam:Object
- id: GO:0051009
  label: O-acetylhomoserine sulfhydrylase activity
  type: gocam:Object
- id: PomBase:SPBC428.11
  label: met17 Spom
  type: gocam:Object
- id: GO:0071266
  label: '''de novo'' L-methionine biosynthetic process'
  type: gocam:Object
- id: ECO:0000501
  label: evidence used in automatic assertion
  type: gocam:Object
- id: CHEBI:17588
  label: L-homocysteine
  type: gocam:Object
- id: GO:0003871
  label: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
  type: gocam:Object
- id: PomBase:SPAC9.09
  label: met26 Spom
  type: gocam:Object
- id: CHEBI:16643
  label: L-methionine
  type: gocam:Object
- id: PomBase:SPCC320.05
  label: sul3 Spom
  type: gocam:Object
- id: GO:0030586
  label: '[methionine synthase] reductase (NADPH) activity'
  type: gocam:Object
- id: PomBase:SPAC1783.01
  label: SPAC1783.01 Spom
  type: gocam:Object
- id: CHEBI:59789
  label: S-adenosyl-L-methionine zwitterion
  type: gocam:Object
- id: PomBase:SPBC12C2.03c
  label: SPBC12C2.03c Spom
  type: gocam:Object
- id: CHEBI:57856
  label: S-adenosyl-L-homocysteine zwitterion
  type: gocam:Object
- id: CHEBI:16288
  label: O-acetyl-L-homoserine
  type: gocam:Object
- id: GO:0004414
  label: homoserine O-acetyltransferase activity
  type: gocam:Object
- id: PomBase:SPBC56F2.11
  label: met6 Spom
  type: gocam:Object
- id: ECO:0000314
  label: direct assay evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000269
  label: experimental evidence used in manual assertion
  type: gocam:Object
- id: GO:0004478
  label: methionine adenosyltransferase activity
  type: gocam:Object
- id: PomBase:SPBC14F5.05c
  label: sam1 Spom
  type: gocam:Object
- id: GO:0006556
  label: S-adenosylmethionine biosynthetic process
  type: gocam:Object
- id: ECO:0000316
  label: genetic interaction evidence used in manual assertion
  type: gocam:Object
- id: GO:0160244
  label: sulfite export across plasma membrane
  type: gocam:Object
- id: ECO:0000304
  label: author statement supported by traceable reference used in manual assertion
  type: gocam:Object
- id: GO:0004013
  label: adenosylhomocysteinase activity
  type: gocam:Object
- id: PomBase:SPBC8D2.18c
  label: sah1 Spom
  type: gocam:Object
- id: GO:0033353
  label: L-methionine cycle
  type: gocam:Object
- id: CHEBI:16335
  label: adenosine
  type: gocam:Object
- id: GO:0003962
  label: cystathionine gamma-synthase activity
  type: gocam:Object
- id: PomBase:SPBC15D4.09c
  label: met3 Spom
  type: gocam:Object
- id: GO:0019344
  label: L-cysteine biosynthetic process
  type: gocam:Object
- id: ECO:0000250
  label: sequence similarity evidence used in manual assertion
  type: gocam:Object
- id: GO:0004122
  label: cystathionine beta-synthase activity
  type: gocam:Object
- id: CHEBI:36080
  label: protein
  type: gocam:Object
- id: CHEBI:58161
  label: L-cystathionine dizwitterion
  type: gocam:Object
- id: CHEBI:30031
  label: succinate(2-)
  type: gocam:Object
- id: CHEBI:57661
  label: O-succinyl-L-homoserinate(1-)
  type: gocam:Object
- id: CHEBI:35235
  label: L-cysteine zwitterion
  type: gocam:Object
provenances:
- contributor:
  - https://orcid.org/0000-0001-6330-7526
  date: '2026-05-28'
  provided_by:
  - http://www.pombase.org
