id: gomodel:67c10cc400000148
title: L-glutamate biosynthetic process (GO:0097054), L-alanine biosynthetic process
  (GO:0042852), L-alanine catabolic process (GO:0042853)
taxon: NCBITaxon:4896
status: production
date_modified: '2026-04-08'
comments:
- 'Automated change 2026-01-22: GO:0010133 replaced by GO:0006562'
- 'Automated change 2026-03-26: GO:0019878 replaced by GO:0009085'
- 'Automated change 2026-03-26: GO:0042450 replaced by GO:0006526'
activities:
- id: gomodel:67c10cc400000148/684b6c8100000208
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000250
      reference: GO_REF:0000024
      with_objects:
      - UniProtKB:Q04728
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-06-13'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-06-13'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPBC1271.14
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0004358
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN001134096
      - SGD:S000004666
      provenances:
      - contributor:
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        date: '2025-06-13'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-06-13'
      provided_by:
      - http://www.pombase.org
    term: GO:0005759
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000269
      reference: PMID:32896087
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-06-13'
        provided_by:
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    provenances:
    - contributor:
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      date: '2025-06-13'
      provided_by:
      - http://www.pombase.org
    term: GO:0006526
  molecular_associations:
  - type: MoleculeAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-07-08'
      provided_by:
      - http://www.pombase.org
    predicate: RO:0002233
    molecule: gomodel:67c10cc400000148/685de18700006467
  - type: MoleculeAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-06-13'
      provided_by:
      - http://www.pombase.org
    predicate: RO:0002233
    molecule: gomodel:67c10cc400000148/684b6c8100000218
  - type: MoleculeAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-06-20'
      provided_by:
      - http://www.pombase.org
    predicate: RO:0002234
    molecule: gomodel:67c10cc400000148/684b6c8100001857
  - type: MoleculeAssociation
    evidence: []
    provenances:
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      - https://orcid.org/0000-0001-6330-7526
      date: '2025-06-20'
      provided_by:
      - http://www.pombase.org
    predicate: RO:0002234
    molecule: gomodel:67c10cc400000148/684b6c8100001856
- id: gomodel:67c10cc400000148/69729a3800003529
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000501
      reference: GO_REF:0000002
      with_objects:
      - InterPro:IPR008146
      - InterPro:IPR008147
      - InterPro:IPR036651
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
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    - term: ECO:0000501
      reference: GO_REF:0000116
      with_objects:
      - RHEA:16169
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000314
      reference: PMID:13760
      provenances:
      - contributor:
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        date: '2026-01-29'
        provided_by:
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    - term: ECO:0000314
      reference: PMID:28982178
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000315
      reference: PMID:2900077
      provenances:
      - contributor:
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        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000314
      reference: PMID:7773104
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000465001
      - MGI:MGI:95739
      - FB:FBgn0001142
      - FB:FBgn0001145
      - PomBase:SPAC23H4.06
      - RGD:2710
      - UniProtKB:O04998
      - UniProtKB:A8WCU3
      - SGD:S000006239
      - UniProtKB:P15104
      provenances:
      - contributor:
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        date: '2026-01-29'
        provided_by:
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    provenances:
    - contributor:
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      date: '2026-01-29'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPAC23H4.06
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0004356
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0007005
      reference: PMID:16823372
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0009-0003-9059-1333
      date: '2026-01-29'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000501
      reference: GO_REF:0000002
      with_objects:
      - InterPro:IPR008147
      - InterPro:IPR036651
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000315
      reference: PMID:2900077
      provenances:
      - contributor:
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        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000314
      reference: PMID:7773104
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000465001
      - PomBase:SPAC23H4.06
      - SGD:S000006239
      - RGD:2710
      - FB:FBgn0001142
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0009-0003-9059-1333
      date: '2026-01-29'
      provided_by:
      - http://www.pombase.org
    term: GO:1901704
  molecular_associations:
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000501
      reference: GO_REF:0000002
      with_objects:
      - InterPro:IPR008146
      - InterPro:IPR008147
      - InterPro:IPR036651
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000501
      reference: GO_REF:0000116
      with_objects:
      - RHEA:16169
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000314
      reference: PMID:13760
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000314
      reference: PMID:28982178
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000315
      reference: PMID:2900077
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000314
      reference: PMID:7773104
      provenances:
      - contributor:
        - https://orcid.org/0009-0003-9059-1333
        date: '2026-01-29'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000465001
      - MGI:MGI:95739
      - FB:FBgn0001142
      - FB:FBgn0001145
      - PomBase:SPAC23H4.06
      - RGD:2710
      - UniProtKB:O04998
      - UniProtKB:A8WCU3
      - SGD:S000006239
      - UniProtKB:P15104
      provenances:
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        date: '2026-01-29'
        provided_by:
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    provenances:
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      date: '2026-01-29'
      provided_by:
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    predicate: RO:0002234
    molecule: gomodel:67c10cc400000148/69729a3800003527
- id: gomodel:67c10cc400000148/68b0f0d000000281
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000012469
      - UniProtKB:P04805
      - UniProtKB:Q8IDD3
      - UniProtKB:Q5JPH6
      provenances:
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        date: '2025-08-29'
        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-29'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPAPB1A10.11c
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0004818
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0000305
      reference: GO_REF:0000111
      with_objects:
      - GO:0005739
      - GO:0043039
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-08-29'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-29'
      provided_by:
      - http://www.pombase.org
    term: GO:0005759
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000012469
      - UniProtKB:P04805
      - UniProtKB:Q8IDD3
      - UniProtKB:Q5JPH6
      provenances:
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        provided_by:
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    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-29'
      provided_by:
      - http://www.pombase.org
    term: GO:0006424
  molecular_associations:
  - type: MoleculeAssociation
    evidence: []
    provenances:
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      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-29'
      provided_by:
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    predicate: RO:0002233
    molecule: gomodel:67c10cc400000148/68b0f0d000000288
  - type: MoleculeAssociation
    evidence: []
    provenances:
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      date: '2025-08-29'
      provided_by:
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    predicate: RO:0002233
    molecule: gomodel:67c10cc400000148/685de18700006467
- id: gomodel:67c10cc400000148/67e5e74400003676
  enabled_by:
    type: EnabledByGeneProductAssociation
    evidence:
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000206950
      - SGD:S000005862
      - CGD:CAL0000182169
      - RGD:1304832
      - UniProtKB:P00957
      - MGI:MGI:2384560
      - UniProtKB:P49588
      - UniProtKB:Q5JTZ9
      provenances:
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        date: '2025-04-09'
        provided_by:
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      date: '2025-04-09'
      provided_by:
      - http://www.pombase.org
    term: PomBase:SPAC23C11.09
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0004813
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0000305
      reference: GO_REF:0000111
      with_objects:
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      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-08-28'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-28'
      provided_by:
      - http://www.pombase.org
    term: GO:0005759
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000303
      reference: GO_REF:0000051
      provenances:
      - contributor:
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        provided_by:
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    provenances:
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      date: '2025-04-09'
      provided_by:
      - http://www.pombase.org
    term: GO:0006419
  molecular_associations:
  - type: MoleculeAssociation
    evidence: []
    provenances:
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      provided_by:
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      provided_by:
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    predicate: RO:0002233
    molecule: gomodel:67c10cc400000148/689e7a5d00005513
  - type: MoleculeAssociation
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      reference: GO_REF:0000033
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    molecule: gomodel:67c10cc400000148/684b6c8100001871
- id: gomodel:67c10cc400000148/684b6c8100001835
  enabled_by:
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    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
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      provided_by:
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    term: PomBase:SPBC24C6.04
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0003842
  occurs_in:
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    evidence:
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      reference: GO_REF:0000033
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      provided_by:
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    term: GO:0005759
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      with_objects:
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    term: GO:0006562
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      - FB:FBgn0001098
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    term: PomBase:SPCC132.04c
  molecular_function:
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    term: GO:0005759
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    evidence:
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    term: GO:0005759
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    term: GO:0031966
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    term: GO:0006868
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    - term: ECO:0000250
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    molecule: gomodel:67c10cc400000148/685de18700006525
molecules:
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  term: CHEBI:57972
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      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:67c10cc400000148/685de18700006467
  term: CHEBI:29985
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    term: GO:0005759
- id: gomodel:67c10cc400000148/684b6c8100001857
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      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:67c10cc400000148/689e7a5d00005513
  term: PomBase:SPMITTRNAALA.01
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  term: CHEBI:16543
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    term: GO:0005759
- id: gomodel:67c10cc400000148/684b6c8100001861
  term: CHEBI:57287
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      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:67c10cc400000148/684b6c8100001860
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    evidence: []
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      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:67c10cc400000148/68b0f0d000000288
  term: PomBase:SPMITTRNAGLU.01
- id: gomodel:67c10cc400000148/69729a3800003527
  term: CHEBI:58359
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    type: CellularAnatomicalEntityAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0009-0003-9059-1333
      date: '2026-01-29'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:67c10cc400000148/67c10cc400001203
  term: CHEBI:58359
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    type: CellularAnatomicalEntityAssociation
    evidence: []
    provenances:
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      provided_by:
      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:67c10cc400000148/68b0f0d000007358
  term: CHEBI:46911
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    type: CellularAnatomicalEntityAssociation
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      date: '2025-09-17'
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      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:67c10cc400000148/69729a3800005430
  term: CHEBI:36655
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    type: CellularAnatomicalEntityAssociation
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    provenances:
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      - https://orcid.org/0009-0003-9059-1333
      date: '2026-02-04'
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      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:67c10cc400000148/68b0f0d000000296
  term: PomBase:SPMITTRNAGLN.01
- id: gomodel:67c10cc400000148/685de18700006525
  term: CHEBI:16810
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    type: CellularAnatomicalEntityAssociation
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    provenances:
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      - https://orcid.org/0000-0001-6330-7526
      date: '2025-07-08'
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      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:67c10cc400000148/69729a3800005434
  term: CHEBI:57305
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    type: CellularAnatomicalEntityAssociation
    evidence: []
    provenances:
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      - https://orcid.org/0009-0003-9059-1333
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      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:67c10cc400000148/684b6c8100001856
  term: CHEBI:44337
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    type: CellularAnatomicalEntityAssociation
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    provenances:
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      provided_by:
      - http://www.pombase.org
    term: GO:0005759
objects:
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  label: glutamate synthase (NADH) activity
  type: gocam:Object
- id: PomBase:SPAPB1E7.07
  label: glt1 Spom
  type: gocam:Object
- id: GO:0097054
  label: L-glutamate biosynthetic process
  type: gocam:Object
- id: GO:0005759
  label: mitochondrial matrix
  type: gocam:Object
- id: ECO:0000314
  label: direct assay evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000318
  label: biological aspect of ancestor evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000305
  label: curator inference used in manual assertion
  type: gocam:Object
- id: CHEBI:58359
  label: L-glutamine zwitterion
  type: gocam:Object
- id: GO:0004021
  label: L-alanine:2-oxoglutarate transaminase activity
  type: gocam:Object
- id: PomBase:SPBC582.08
  label: alt1 Spom
  type: gocam:Object
- id: ECO:0000250
  label: sequence similarity evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000303
  label: author statement without traceable support used in manual assertion
  type: gocam:Object
- id: GO:0004813
  label: alanine-tRNA ligase activity
  type: gocam:Object
- id: PomBase:SPAC23C11.09
  label: ala1 Spom
  type: gocam:Object
- id: GO:0006419
  label: alanyl-tRNA aminoacylation
  type: gocam:Object
- id: GO:0004352
  label: L-glutamate dehydrogenase (NAD+) activity
  type: gocam:Object
- id: PomBase:SPCC132.04c
  label: gdh2 Spom
  type: gocam:Object
- id: GO:0006538
  label: L-glutamate catabolic process
  type: gocam:Object
- id: ECO:0000269
  label: experimental evidence used in manual assertion
  type: gocam:Object
- id: GO:0004818
  label: glutamate-tRNA ligase activity
  type: gocam:Object
- id: PomBase:SPAPB1A10.11c
  label: mse1 Spom
  type: gocam:Object
- id: GO:0006424
  label: glutamyl-tRNA aminoacylation
  type: gocam:Object
- id: PomBase:SPMITTRNAGLU.01
  label: SPMITTRNAGLU.01 Spom
  type: gocam:Object
- id: GO:0050567
  label: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
  type: gocam:Object
- id: GO:0030956
  label: glutamyl-tRNA(Gln) amidotransferase complex
  type: gocam:Object
- id: PomBase:SPBC646.03
  label: gta1 Spom
  type: gocam:Object
- id: PomBase:SPAC343.13
  label: gta2 Spom
  type: gocam:Object
- id: PomBase:SPCC777.11
  label: gta3 Spom
  type: gocam:Object
- id: PomBase:SPMITTRNAGLN.01
  label: SPMITTRNAGLN.01 Spom
  type: gocam:Object
- id: GO:0000064
  label: L-ornithine transmembrane transporter activity
  type: gocam:Object
- id: PomBase:SPBC29A3.11c
  label: ort1 Spom
  type: gocam:Object
- id: GO:1990575
  label: mitochondrial L-ornithine transmembrane transport
  type: gocam:Object
- id: GO:0005743
  label: mitochondrial inner membrane
  type: gocam:Object
- id: ECO:0000266
  label: sequence orthology evidence used in manual assertion
  type: gocam:Object
- id: CHEBI:46911
  label: L-ornithinium(1+)
  type: gocam:Object
- id: GO:0005829
  label: cytosol
  type: gocam:Object
- id: GO:0004042
  label: L-glutamate N-acetyltransferase activity, acting on acetyl-CoA as donor
  type: gocam:Object
- id: PomBase:SPBC725.14
  label: arg6 Spom
  type: gocam:Object
- id: GO:0006526
  label: L-arginine biosynthetic process
  type: gocam:Object
- id: CHEBI:57288
  label: acetyl-CoA(4-)
  type: gocam:Object
- id: GO:0004358
  label: L-glutamate N-acetyltransferase activity, acting on acetyl-L-ornithine as
    donor
  type: gocam:Object
- id: PomBase:SPBC1271.14
  label: aga1 Spom
  type: gocam:Object
- id: CHEBI:16543
  label: N(2)-acetyl-L-ornithine
  type: gocam:Object
- id: GO:0004410
  label: homocitrate synthase activity
  type: gocam:Object
- id: PomBase:SPBC1105.02c
  label: lys4 Spom
  type: gocam:Object
- id: GO:0009085
  label: L-lysine biosynthetic process
  type: gocam:Object
- id: ECO:0000315
  label: mutant phenotype evidence used in manual assertion
  type: gocam:Object
- id: GO:0003842
  label: L-glutamate gamma-semialdehyde dehydrogenase activity
  type: gocam:Object
- id: PomBase:SPBC24C6.04
  label: put2 Spom
  type: gocam:Object
- id: GO:0006562
  label: L-proline catabolic process
  type: gocam:Object
- id: CHEBI:44337
  label: N-acetyl-L-glutamate(2-)
  type: gocam:Object
- id: CHEBI:57287
  label: coenzyme A(4-)
  type: gocam:Object
- id: CHEBI:57972
  label: L-alanine zwitterion
  type: gocam:Object
- id: GO:0042852
  label: L-alanine biosynthetic process
  type: gocam:Object
- id: CHEBI:15361
  label: pyruvate
  type: gocam:Object
- id: CHEBI:29985
  label: L-glutamate(1-)
  type: gocam:Object
- id: CHEBI:16810
  label: 2-oxoglutarate(2-)
  type: gocam:Object
- id: PomBase:SPMITTRNAALA.01
  label: SPMITTRNAALA.01 Spom
  type: gocam:Object
- id: GO:0042853
  label: L-alanine catabolic process
  type: gocam:Object
- id: GO:0015186
  label: L-glutamine transmembrane transporter activity
  type: gocam:Object
- id: CHEBI:36080
  label: protein
  type: gocam:Object
- id: GO:0006868
  label: L-glutamine transport
  type: gocam:Object
- id: GO:0031966
  label: mitochondrial membrane
  type: gocam:Object
- id: GO:0004356
  label: glutamine synthetase activity
  type: gocam:Object
- id: PomBase:SPAC23H4.06
  label: gln1 Spom
  type: gocam:Object
- id: GO:1901704
  label: L-glutamine biosynthetic process
  type: gocam:Object
- id: ECO:0000501
  label: evidence used in automatic assertion
  type: gocam:Object
- id: ECO:0007005
  label: high throughput direct assay evidence used in manual assertion
  type: gocam:Object
- id: GO:0008453
  label: L-alanine:glyoxylate transaminase activity
  type: gocam:Object
- id: PomBase:SPAC1039.07c
  label: SPAC1039.07c Spom
  type: gocam:Object
- id: CHEBI:36655
  label: glyoxylate
  type: gocam:Object
- id: CHEBI:57305
  label: glycine zwitterion
  type: gocam:Object
provenances:
- contributor:
  - https://orcid.org/0000-0001-6330-7526
  - https://orcid.org/0009-0003-9059-1333
  date: '2026-04-08'
  provided_by:
  - http://www.pombase.org
