id: gomodel:689e7a5d00001868
title: mitochondrial tRNA modification (GO:0070900 ) (cysteine)
taxon: NCBITaxon:4896
status: production
date_modified: '2025-12-01'
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    term: PomBase:SPBC9B6.04c
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    term: GO:0005759
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      reference: PMID:15695360
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        - http://www.pombase.org
    - term: ECO:0000318
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    term: GO:0070125
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    provenances:
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    predicate: RO:0002233
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    predicate: RO:0002233
    molecule: gomodel:689e7a5d00001868/689e7a5d00001885
- id: gomodel:689e7a5d00001868/689e7a5d00001906
  enabled_by:
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    evidence:
    - term: ECO:0000314
      reference: PMID:30528393
      provenances:
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        - https://orcid.org/0000-0001-6330-7526
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        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
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      - SGD:S000000970
      - PomBase:SPCC645.10
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      - http://www.pombase.org
    term: PomBase:SPCC645.10
  molecular_function:
    type: MolecularFunctionAssociation
    term: GO:0052929
  occurs_in:
    type: CellularAnatomicalEntityAssociation
    evidence:
    - term: ECO:0000305
      reference: GO_REF:0000111
      with_objects:
      - GO:0052929,GO:1990180
      provenances:
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        - https://orcid.org/0000-0001-6330-7526
        date: '2025-08-19'
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        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-19'
      provided_by:
      - http://www.pombase.org
    term: GO:0005759
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000314
      reference: PMID:30528393
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
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        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
      with_objects:
      - PANTHER:PTN000348225
      - PomBase:SPCC645.10
      - dictyBase:DDB_G0271378
      - SGD:S000000970
      - PomBase:SPAC1093.04c
      - dictyBase:DDB_G0293504
      provenances:
      - contributor:
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    provenances:
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      date: '2025-08-19'
      provided_by:
      - http://www.pombase.org
    term: GO:1990180
  causal_associations:
  - type: CausalAssociation
    evidence:
    - term: ECO:0000314
      reference: PMID:30528393
      provenances:
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        - https://orcid.org/0000-0001-6330-7526
        date: '2025-08-27'
        provided_by:
        - http://www.pombase.org
    - term: ECO:0000318
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      - SGD:S000000970
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      provenances:
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        - https://orcid.org/0000-0001-6330-7526
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        provided_by:
        - http://www.pombase.org
    - term: ECO:0000314
      reference: PMID:30528393
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    provenances:
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      - http://www.pombase.org
    predicate: RO:0012009
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  - type: CausalAssociation
    evidence:
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        - http://www.pombase.org
    - term: ECO:0000318
      reference: GO_REF:0000033
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      - PANTHER:PTN000749879
      - SGD:S000000970
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      provenances:
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      - http://www.pombase.org
    predicate: RO:0012009
    downstream_activity: gomodel:689e7a5d00001868/689e7a5d00001979
  - type: CausalAssociation
    evidence:
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      reference: GO_REF:0000033
      with_objects:
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      - SGD:S000000970
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      provenances:
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    provenances:
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      - http://www.pombase.org
    predicate: RO:0012009
    downstream_activity: gomodel:689e7a5d00001868/689e7a5d00001926
molecules:
- id: gomodel:689e7a5d00001868/689e7a5d00001965
  term: CHEBI:35235
  located_in:
    type: CellularAnatomicalEntityAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-19'
      provided_by:
      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:689e7a5d00001868/689e7a5d00004030
  term: CHEBI:16057
  located_in:
    type: CellularAnatomicalEntityAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-23'
      provided_by:
      - http://www.pombase.org
    term: GO:0005829
- id: gomodel:689e7a5d00001868/689e7a5d00001886
  term: GO:0005763
- id: gomodel:689e7a5d00001868/689e7a5d00004038
  term: CHEBI:57623
  located_in:
    type: CellularAnatomicalEntityAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-08-23'
      provided_by:
      - http://www.pombase.org
    term: GO:0005759
- id: gomodel:689e7a5d00001868/689e7a5d00002808
  term: PomBase:SPMITTRNACYS.01
- id: gomodel:689e7a5d00001868/689e7a5d00001885
  term: CHEBI:2651
objects:
- id: GO:0030674
  label: protein-macromolecule adaptor activity
  type: gocam:Object
- id: PomBase:SPBC9B6.04c
  label: tuf1 Spom
  type: gocam:Object
- id: GO:0070125
  label: mitochondrial translational elongation
  type: gocam:Object
- id: GO:0005759
  label: mitochondrial matrix
  type: gocam:Object
- id: ECO:0000269
  label: experimental evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000318
  label: biological aspect of ancestor evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000250
  label: sequence similarity evidence used in manual assertion
  type: gocam:Object
- id: CHEBI:2651
  label: alpha-aminoacyl-tRNA
  type: gocam:Object
- id: GO:0005763
  label: mitochondrial small ribosomal subunit
  type: gocam:Object
- id: GO:0052929
  label: ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity
  type: gocam:Object
- id: PomBase:SPCC645.10
  label: cca2 Spom
  type: gocam:Object
- id: GO:1990180
  label: mitochondrial tRNA 3'-end processing
  type: gocam:Object
- id: ECO:0000314
  label: direct assay evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000305
  label: curator inference used in manual assertion
  type: gocam:Object
- id: GO:0061711
  label: tRNA N(6)-L-threonylcarbamoyladenine synthase activity
  type: gocam:Object
- id: PomBase:SPCC1259.10
  label: pgp1 Spom
  type: gocam:Object
- id: GO:0072670
  label: mitochondrial tRNA threonylcarbamoyladenosine modification
  type: gocam:Object
- id: ECO:0000266
  label: sequence orthology evidence used in manual assertion
  type: gocam:Object
- id: GO:0061710
  label: L-threonylcarbamoyladenylate synthase activity
  type: gocam:Object
- id: PomBase:SPCC895.03c
  label: sua5 Spom
  type: gocam:Object
- id: ECO:0000501
  label: evidence used in automatic assertion
  type: gocam:Object
- id: ECO:0000304
  label: author statement supported by traceable reference used in manual assertion
  type: gocam:Object
- id: GO:0004817
  label: cysteine-tRNA ligase activity
  type: gocam:Object
- id: PomBase:SPAC29E6.06c
  label: SPAC29E6.06c Spom
  type: gocam:Object
- id: GO:0006423
  label: cysteinyl-tRNA aminoacylation
  type: gocam:Object
- id: CHEBI:35235
  label: L-cysteine zwitterion
  type: gocam:Object
- id: GO:0052381
  label: tRNA dimethylallyltransferase activity
  type: gocam:Object
- id: PomBase:SPAC343.15
  label: tit1 Spom
  type: gocam:Object
- id: GO:0006400
  label: tRNA modification
  type: gocam:Object
- id: PomBase:SPMITTRNACYS.01
  label: SPMITTRNACYS.01 Spom
  type: gocam:Object
- id: GO:0004452
  label: isopentenyl-diphosphate delta-isomerase activity
  type: gocam:Object
- id: PomBase:SPBC106.15
  label: idi1 Spom
  type: gocam:Object
- id: GO:0050992
  label: dimethylallyl diphosphate biosynthetic process
  type: gocam:Object
- id: GO:0005829
  label: cytosol
  type: gocam:Object
- id: ECO:0007005
  label: high throughput direct assay evidence used in manual assertion
  type: gocam:Object
- id: CHEBI:16057
  label: prenyl diphosphate
  type: gocam:Object
- id: GO:0022857
  label: transmembrane transporter activity
  type: gocam:Object
- id: CHEBI:36080
  label: protein
  type: gocam:Object
- id: CHEBI:57623
  label: prenyl diphosphate(3-)
  type: gocam:Object
provenances:
- contributor:
  - https://orcid.org/0000-0001-6330-7526
  date: '2025-12-01'
  provided_by:
  - http://www.pombase.org
