id: gomodel:6918f23700004722
title: clathrin-dependent endocytosis (GO:0072583)
taxon: NCBITaxon:4896
status: production
date_modified: '2026-07-27'
activities:
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      provided_by:
      - http://www.pombase.org
    term: GO:0005886
  part_of:
    type: BiologicalProcessAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:34028542
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2025-12-21'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2025-12-21'
      provided_by:
      - http://www.pombase.org
    term: GO:0072583
    part_of:
      type: BiologicalProcessAssociation
      evidence:
      - term: ECO:0000315
        reference: PMID:34028542
        provenances:
        - contributor:
          - https://orcid.org/0000-0001-6330-7526
          date: '2026-06-11'
          provided_by:
          - http://www.pombase.org
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2026-04-22'
        provided_by:
        - http://www.pombase.org
      term: GO:0006995
  molecular_associations:
  - type: MoleculeAssociation
    evidence:
    - term: ECO:0000315
      reference: PMID:34028542
      provenances:
      - contributor:
        - https://orcid.org/0000-0001-6330-7526
        date: '2026-04-22'
        provided_by:
        - http://www.pombase.org
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2026-04-22'
      provided_by:
      - http://www.pombase.org
    predicate: RO:0002233
    molecule: gomodel:6918f23700004722/693b3c0900003719
  causal_associations:
  - type: CausalAssociation
    evidence: []
    provenances:
    - contributor:
      - https://orcid.org/0000-0001-6330-7526
      date: '2026-04-07'
      provided_by:
      - http://www.pombase.org
    predicate: RO:0002413
    downstream_activity: gomodel:6918f23700004722/693b3c0900002767
molecules:
- id: gomodel:6918f23700004722/6a18a9ba00000206
  term: PomBase:SPAC1705.03c
- id: gomodel:6918f23700004722/693b3c0900003719
  term: PomBase:SPCC1235.14
- id: gomodel:6918f23700004722/693b3c0900003710
  term: PomBase:SPAC869.11
objects:
- id: GO:0061631
  label: ubiquitin conjugating enzyme activity
  type: gocam:Object
- id: PomBase:SPBC119.02
  label: ubc4 Spom
  type: gocam:Object
- id: ECO:0000501
  label: evidence used in automatic assertion
  type: gocam:Object
- id: ECO:0000315
  label: mutant phenotype evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000314
  label: direct assay evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000318
  label: biological aspect of ancestor evidence used in manual assertion
  type: gocam:Object
- id: GO:0072583
  label: clathrin-dependent endocytosis
  type: gocam:Object
- id: ECO:0000316
  label: genetic interaction evidence used in manual assertion
  type: gocam:Object
- id: GO:0031386
  label: protein tag activity
  type: gocam:Object
- id: PomBase:SPAC11G7.04
  label: ubi1 Spom
  type: gocam:Object
- id: GO:1990756
  label: ubiquitin-like ligase-substrate adaptor activity
  type: gocam:Object
- id: CHEBI:36080
  label: protein
  type: gocam:Object
- id: PomBase:SPAC1705.03c
  label: ecm33 Spom
  type: gocam:Object
- id: PomBase:SPBC21D10.12
  label: hob1 Spom
  type: gocam:Object
- id: PomBase:SPBC725.09c
  label: hob3 Spom
  type: gocam:Object
- id: GO:0005737
  label: cytoplasm
  type: gocam:Object
- id: ECO:0007005
  label: high throughput direct assay evidence used in manual assertion
  type: gocam:Object
- id: GO:0005886
  label: plasma membrane
  type: gocam:Object
- id: GO:0030136
  label: clathrin-coated vesicle
  type: gocam:Object
- id: GO:0005938
  label: cell cortex
  type: gocam:Object
- id: ECO:0000305
  label: curator inference used in manual assertion
  type: gocam:Object
- id: GO:0030479
  label: actin cortical patch
  type: gocam:Object
- id: ECO:0000250
  label: sequence similarity evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000266
  label: sequence orthology evidence used in manual assertion
  type: gocam:Object
- id: GO:0052811
  label: 1-phosphatidylinositol-3-phosphate 4-kinase activity
  type: gocam:Object
- id: PomBase:SPAC19G12.14
  label: its3 Spom
  type: gocam:Object
- id: GO:1902635
  label: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process
  type: gocam:Object
- id: ECO:0000269
  label: experimental evidence used in manual assertion
  type: gocam:Object
- id: ECO:0000307
  label: no evidence data found used in manual assertion
  type: gocam:Object
- id: GO:0005200
  label: structural constituent of cytoskeleton
  type: gocam:Object
- id: GO:0031941
  label: filamentous actin
  type: gocam:Object
- id: ECO:0000303
  label: author statement without traceable support used in manual assertion
  type: gocam:Object
- id: PomBase:SPAC1F12.05
  label: any2 Spom
  type: gocam:Object
- id: PomBase:SPBC839.02
  label: aly1 Spom
  type: gocam:Object
- id: PomBase:SPBC2D10.04
  label: aly2 Spom
  type: gocam:Object
- id: PomBase:SPBC557.05
  label: SPBC557.05 Spom
  type: gocam:Object
- id: PomBase:SPCP1E11.03
  label: mug170 Spom
  type: gocam:Object
- id: PomBase:SPAC31A2.12
  label: rod1 Spom
  type: gocam:Object
- id: GO:0006897
  label: endocytosis
  type: gocam:Object
- id: GO:0030674
  label: protein-macromolecule adaptor activity
  type: gocam:Object
- id: PomBase:SPBC19F8.03c
  label: yap18 Spom
  type: gocam:Object
- id: GO:0006900
  label: vesicle budding from membrane
  type: gocam:Object
- id: ECO:0000304
  label: author statement supported by traceable reference used in manual assertion
  type: gocam:Object
- id: PomBase:SPBC800.10c
  label: ede1 Spom
  type: gocam:Object
- id: PomBase:SPBC4C3.06
  label: syp1 Spom
  type: gocam:Object
- id: GO:0106006
  label: cytoskeletal protein-membrane anchor activity
  type: gocam:Object
- id: PomBase:SPAC688.11
  label: end4 Spom
  type: gocam:Object
- id: GO:0097754
  label: clathrin-mediated membrane bending
  type: gocam:Object
- id: PomBase:SPCC162.07
  label: ent1 Spom
  type: gocam:Object
- id: GO:0035615
  label: clathrin-cargo adaptor activity
  type: gocam:Object
- id: GO:0030122
  label: AP-2 adaptor complex
  type: gocam:Object
- id: PomBase:SPBC2G2.06c
  label: apl1 Spom
  type: gocam:Object
- id: PomBase:SPBC691.03c
  label: apl3 Spom
  type: gocam:Object
- id: PomBase:SPAC31A2.09c
  label: apm4 Spom
  type: gocam:Object
- id: PomBase:SPBC685.04c
  label: aps2 Spom
  type: gocam:Object
- id: GO:0005198
  label: structural molecule activity
  type: gocam:Object
- id: GO:0071439
  label: clathrin complex
  type: gocam:Object
- id: PomBase:SPBC9B6.08
  label: clc1 Spom
  type: gocam:Object
- id: GO:0003779
  label: actin binding
  type: gocam:Object
- id: GO:0005885
  label: Arp2/3 protein complex
  type: gocam:Object
- id: GO:0034314
  label: Arp2/3 complex-mediated actin nucleation
  type: gocam:Object
- id: PomBase:SPAC11H11.06
  label: arp2 Spom
  type: gocam:Object
- id: PomBase:SPAC630.03
  label: arp3 Spom
  type: gocam:Object
- id: PomBase:SPBC1778.08c
  label: arc3 Spom
  type: gocam:Object
- id: PomBase:SPAC6F6.10c
  label: arc2 Spom
  type: gocam:Object
- id: PomBase:SPAC6G9.07c
  label: arc4 Spom
  type: gocam:Object
- id: PomBase:SPAC17G8.04c
  label: arc5 Spom
  type: gocam:Object
- id: PomBase:SPBC14C8.06
  label: arc1 Spom
  type: gocam:Object
- id: GO:0071933
  label: Arp2/3 complex binding
  type: gocam:Object
- id: PomBase:SPBC24C6.10c
  label: dip1 Spom
  type: gocam:Object
- id: PomBase:SPAC4F10.15c
  label: wsp1 Spom
  type: gocam:Object
- id: GO:0005515
  label: protein binding
  type: gocam:Object
- id: PomBase:SPBC119.05c
  label: lsb1 Spom
  type: gocam:Object
- id: ECO:0000353
  label: physical interaction evidence used in manual assertion
  type: gocam:Object
- id: GO:0003674
  label: molecular_function
  type: gocam:Object
- id: PomBase:SPAPJ696.02
  label: lsb4 Spom
  type: gocam:Object
- id: GO:0007015
  label: actin filament organization
  type: gocam:Object
- id: PomBase:SPAC16E8.01
  label: shd1 Spom
  type: gocam:Object
- id: PomBase:SPBC32H8.12c
  label: act1 Spom
  type: gocam:Object
- id: PomBase:SPBC13E7.09
  label: vrp1 Spom
  type: gocam:Object
- id: GO:0000146
  label: microfilament motor activity
  type: gocam:Object
- id: PomBase:SPBC146.13c
  label: myo1 Spom
  type: gocam:Object
- id: PomBase:SPAC19A8.11c
  label: irc6 Spom
  type: gocam:Object
- id: PomBase:SPBC11G11.02c
  label: end3 Spom
  type: gocam:Object
- id: PomBase:SPBC31F10.07
  label: lsb5 Spom
  type: gocam:Object
- id: PomBase:SPAC25G10.09c
  label: pan1 Spom
  type: gocam:Object
- id: PomBase:SPCC1919.10c
  label: myo52 Spom
  type: gocam:Object
- id: GO:0140311
  label: protein sequestering activity
  type: gocam:Object
- id: PomBase:SPAC105.02c
  label: ank1 Spom
  type: gocam:Object
- id: PomBase:SPAC26A3.05
  label: chc1 Spom
  type: gocam:Object
- id: GO:0061630
  label: ubiquitin protein ligase activity
  type: gocam:Object
- id: PomBase:SPAC11G7.02
  label: pub1 Spom
  type: gocam:Object
- id: PomBase:SPBC19C7.05
  label: rcr1 Spom
  type: gocam:Object
- id: GO:0051015
  label: actin filament binding
  type: gocam:Object
- id: GO:0008290
  label: F-actin capping protein complex
  type: gocam:Object
- id: GO:0000147
  label: actin cortical patch assembly
  type: gocam:Object
- id: PomBase:SPAC12B10.07
  label: acp1 Spom
  type: gocam:Object
- id: PomBase:SPAC631.01c
  label: acp2 Spom
  type: gocam:Object
- id: GO:0004674
  label: protein serine/threonine kinase activity
  type: gocam:Object
- id: PomBase:SPBC557.04
  label: ppk29 Spom
  type: gocam:Object
- id: GO:2000369
  label: regulation of clathrin-dependent endocytosis
  type: gocam:Object
- id: PomBase:SPBC6B1.02
  label: ppk30 Spom
  type: gocam:Object
- id: PomBase:SPCP1E11.02
  label: ppk38 Spom
  type: gocam:Object
- id: PomBase:SPBC12C2.05c
  label: bzz1 Spom
  type: gocam:Object
- id: GO:0003785
  label: actin monomer binding
  type: gocam:Object
- id: PomBase:SPAC4A8.15c
  label: cdc3 Spom
  type: gocam:Object
- id: GO:0030041
  label: actin filament polymerization
  type: gocam:Object
- id: GO:0043495
  label: protein-membrane adaptor activity
  type: gocam:Object
- id: GO:1990528
  label: Rvs161p-Rvs167p complex
  type: gocam:Object
- id: ECO:0000255
  label: match to sequence model evidence used in manual assertion
  type: gocam:Object
- id: GO:1990606
  label: membrane scission GTPase motor activity
  type: gocam:Object
- id: PomBase:SPAC767.01c
  label: vps1 Spom
  type: gocam:Object
- id: GO:0180020
  label: membrane bending activity
  type: gocam:Object
- id: PomBase:SPBC19C2.10
  label: SPBC19C2.10 Spom
  type: gocam:Object
- id: PomBase:SPBC1778.06c
  label: fim1 Spom
  type: gocam:Object
- id: GO:0044396
  label: actin cortical patch organization
  type: gocam:Object
- id: GO:0003786
  label: actin lateral binding
  type: gocam:Object
- id: PomBase:SPAC27F1.02c
  label: cdc8 Spom
  type: gocam:Object
- id: GO:0003924
  label: GTPase activity
  type: gocam:Object
- id: PomBase:SPAC110.03
  label: cdc42 Spom
  type: gocam:Object
- id: GO:0005085
  label: guanyl-nucleotide exchange factor activity
  type: gocam:Object
- id: PomBase:SPAC24H6.09
  label: gef1 Spom
  type: gocam:Object
- id: PomBase:SPAC16E8.09
  label: scd1 Spom
  type: gocam:Object
- id: PomBase:SPBC6B1.03c
  label: pal2 Spom
  type: gocam:Object
- id: PomBase:SPBC18H10.20c
  label: any1 Spom
  type: gocam:Object
- id: PomBase:SPAC869.11
  label: cat1 Spom
  type: gocam:Object
- id: PomBase:SPCC584.15c
  label: aly3 Spom
  type: gocam:Object
- id: PomBase:SPCC1235.14
  label: ght5 Spom
  type: gocam:Object
- id: GO:0006995
  label: cellular response to nitrogen starvation
  type: gocam:Object
- id: PomBase:SPAC23A1.17
  label: bbc1 Spom
  type: gocam:Object
- id: GO:0030036
  label: actin cytoskeleton organization
  type: gocam:Object
provenances:
- contributor:
  - https://orcid.org/0000-0001-6330-7526
  date: '2026-07-27'
  provided_by:
  - http://www.pombase.org
