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Reference - GO_REF:0000108 - Automatic assignment of GO terms using logical inference, based on on inter-ontology links.

Reference summary

PubMed ID
GO_REF:0000108
Title
Automatic assignment of GO terms using logical inference, based on on inter-ontology links.
Authors
GOA curators
Abstract
GO terms are automatically assigned based on inter-ontology links to generate inferred annotations. Annotations from Molecular Function to Biological Process can be propagated, as well as between Biological Process and Cellular Component. Annotations that are created using this inference method receive either the evidence code ECO:0000366 (evidence based on logical inference from automatic annotation used in automatic assertion) or ECO:0000364 (evidence based on logical inference from manual annotation used in automatic assertion), depending on whether the source annotation has a manual or automatic evidence code. Both of these codes map up to the GO Inferred from Electronic Annotation (IEA) evidence code.

Annotation

GO biological process

GO:0003333 - amino acid transmembrane transport

Genes:

GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity

Genes:

GO:0140331 - aminophospholipid translocation

Genes:

GO:0070588 - calcium ion transmembrane transport

Genes:

GO:0034219 - carbohydrate transmembrane transport

Genes:

GO:0098869 - cellular oxidant detoxification

Genes:

GO:1902476 - chloride transmembrane transport

Genes:

GO:0015871 - choline transport

Genes:

GO:0006325 - chromatin organization

Genes:

GO:0006338 - chromatin remodeling

Genes:

GO:0009224 - CMP biosynthetic process

Genes:

GO:0006835 - dicarboxylic acid transport

Genes:

GO:0006761 - dihydrofolate biosynthetic process

Genes:

GO:0071897 - DNA biosynthetic process

Genes:

GO:0090150 - establishment of protein localization to membrane

Genes:

GO:0015903 - fluconazole transport

Genes:

GO:0006177 - GMP biosynthetic process

Genes:

GO:0051170 - import into nucleus

Genes:

GO:0120009 - intermembrane lipid transfer

Genes:

GO:1902475 - L-alpha-amino acid transmembrane transport

Genes:

GO:0070778 - L-aspartate transmembrane transport

Genes:

GO:0071267 - L-methionine salvage

Genes:

GO:0015825 - L-serine transport

Genes:

GO:0000165 - MAPK cascade

Genes:

GO:0061025 - membrane fusion

Genes:

GO:0098655 - monoatomic cation transmembrane transport

Genes:

GO:0034220 - monoatomic ion transmembrane transport

Genes:

GO:0015718 - monocarboxylic acid transport

Genes:

GO:0000122 - negative regulation of transcription by RNA polymerase II

Genes:

GO:2001142 - nicotinate transport

Genes:

GO:0051168 - nuclear export

Genes:

GO:0006913 - nucleocytoplasmic transport

Genes:

GO:0035672 - oligopeptide transmembrane transport

Genes:

GO:0006591 - ornithine metabolic process

Genes:

GO:0036092 - phosphatidylinositol-3-phosphate biosynthetic process

Genes:

GO:0017121 - plasma membrane phospholipid scrambling

Genes:

GO:1902047 - polyamine transmembrane transport

Genes:

GO:0045944 - positive regulation of transcription by RNA polymerase II

Genes:

GO:0006457 - protein folding

Genes:

GO:0071806 - protein transmembrane transport

Genes:

GO:1902600 - proton transmembrane transport

Genes:

GO:0015860 - purine nucleoside transmembrane transport

Genes:

GO:1903090 - pyridoxal transmembrane transport

Genes:

GO:1903091 - pyridoxamine transmembrane transport

Genes:

GO:1903092 - pyridoxine transmembrane transport

Genes:

GO:0160287 - queuosine import across plasma membrane

Genes:

GO:0006357 - regulation of transcription by RNA polymerase II

Genes:

GO:0019430 - removal of superoxide radicals

Genes:

GO:0034337 - RNA folding

Genes:

GO:0001188 - RNA polymerase I preinitiation complex assembly

Genes:

GO:0006278 - RNA-templated DNA biosynthetic process

Genes:

GO:0001172 - RNA-templated transcription

Genes:

GO:0000451 - rRNA 2'-O-methylation

Genes:

GO:0035725 - sodium ion transmembrane transport

Genes:

GO:1903711 - spermidine transmembrane transport

Genes:

GO:1903710 - spermine transmembrane transport

Genes:

GO:0015709 - thiosulfate transport

Genes:

GO:0055085 - transmembrane transport

Genes:

GO:0016192 - vesicle-mediated transport

Genes:

GO:0042908 - xenobiotic transport

Genes:

GO cellular component

GO:0005938 - cell cortex

Genes:

GO:0140445 - chromosome, telomeric repeat region

Genes:

GO:0005829 - cytosol

Genes:

GO:0005783 - endoplasmic reticulum

Genes:

GO:0044322 - endoplasmic reticulum quality control compartment

Genes:

GO:0000139 - Golgi membrane

Genes:

GO:0005739 - mitochondrion

Genes: