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Reference - GO_REF:0000116 - Automatic Gene Ontology annotation based on Rhea mapping.

Reference summary

PubMed ID
GO_REF:0000116
Title
Automatic Gene Ontology annotation based on Rhea mapping.
Authors
GO Central curators, GOA curators, Rhea curators
Abstract
Rhea (https://www.rhea-db.org/, PMID:30272209) is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB (PMID:31688925). Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants and their chemical transformations in a computationally tractable manner. GO terms corresponding to Rhea reactions are assigned a Rhea database cross-reference. The corresponding GO term is automatically applied to all UniProt entries annotated with a Rhea reaction. The mapping file is available at: http://current.geneontology.org/ontology/external2go/rhea2go.

Annotation

GO molecular function

GO:0004337 - (2E,6E)-farnesyl diphosphate synthase activity

Genes:

GO:0120568 - (R)-2-hydroxyglutarate (NAD+) dehydrogenase activity

Genes:

GO:0106262 - 1-acylglycerophosphoethanolamine O-acyltransferase activity

Genes:

GO:0003846 - 2-acylglycerol O-acyltransferase activity

Genes:

GO:0008682 - 3-demethoxyubiquinol 3-hydroxylase activity

Genes:

GO:0120537 - 3-demethylubiquinone 3-O-methyltransferase activity

Genes:

GO:0010308 - acireductone dioxygenase (Ni2+-requiring) activity

Genes:

GO:0047657 - alpha-1,3-glucan synthase activity

Genes:

GO:0004050 - apyrase activity

Genes:

GO:0141192 - ATP:ATP adenylyltransferase activity

Genes:

GO:0004087 - carbamoyl-phosphate synthase (ammonia) activity

Genes:

GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Genes:

GO:0141035 - CTP-dependent diacylglycerol kinase activity

Genes:

GO:0160205 - cysteine-dependent adenosine diphosphate thiazole synthase activity

Genes:

GO:0043771 - cytidine kinase activity

Genes:

GO:0090524 - cytochrome-b5 reductase activity, acting on NADH

Genes:

GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity

Genes:

GO:0106430 - dihydroorotate dehydrogenase (quinone) activity

Genes:

GO:0061685 - diphthine methylesterase activity

Genes:

GO:0034061 - DNA polymerase activity

Genes:

GO:0052926 - dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity

Genes:

GO:0052918 - dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity

Genes:

GO:0036218 - dTTP diphosphatase activity

Genes:

GO:0140682 - FAD-dependent H3K4me/H3K4me3 demethylase activity

Genes:

GO:0016971 - flavin-dependent sulfhydryl oxidase activity

Genes:

GO:0052874 - FMN reductase (NADH) activity

Genes:

GO:0052873 - FMN reductase (NADPH) activity

Genes:

GO:0004328 - formamidase activity

Genes:

GO:0097023 - fructose 6-phosphate aldolase activity

Genes:

GO:0103026 - fructose-1-phosphatase activity

Genes:

GO:0102704 - GDP-Man:Man(2)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity

Genes:

GO:0004345 - glucose-6-phosphate dehydrogenase activity

Genes:

GO:0004359 - glutaminase activity

Genes:

GO:0045174 - glutathione dehydrogenase (ascorbate) activity

Genes:

GO:0106026 - Gly-tRNA(Ala) deacylase activity

Genes:

GO:0141152 - glycerol-3-phosphate dehydrogenase (NAD+) activity

Genes:

GO:0043799 - glycine oxidase activity

Genes:

GO:0019172 - glyoxalase III activity

Genes:

GO:0003924 - GTPase activity

Genes:

GO:0061686 - hercynylcysteine sulfoxide synthase activity

Genes:

GO:0140680 - histone H3K36me/H3K36me2 demethylase activity

Genes:

GO:0140948 - histone H3K9 monomethyltransferase activity

Genes:

GO:0140949 - histone H3K9 trimethyltransferase activity

Genes:

GO:0140947 - histone H3K9me2 methyltransferase activity

Genes:

GO:0000823 - inositol-1,4,5-trisphosphate 6-kinase activity

Genes:

GO:0061710 - L-threonylcarbamoyladenylate synthase activity

Genes:

GO:0004462 - lactoylglutathione lyase activity

Genes:

GO:0016979 - lipoate-protein ligase activity

Genes:

GO:0004475 - mannose-1-phosphate guanylyltransferase (GTP) activity

Genes:

GO:0106312 - methylenetetrahydrofolate reductase (NADH) activity

Genes:

GO:0106313 - methylenetetrahydrofolate reductase (NADPH) activity

Genes:

GO:0046421 - methylisocitrate lyase activity

Genes:

GO:0106414 - mRNA dihydrouridine synthase activity

Genes:

GO:0120555 - NADH dehydrogenase (ubiquinone) (non-electrogenic) activity

Genes:

GO:0050203 - oxalate-CoA ligase activity

Genes:

GO:0008948 - oxaloacetate decarboxylase activity

Genes:

GO:0106226 - peptide 2-hydroxyisobutyryltransferase activity

Genes:

GO:0140064 - peptide crotonyltransferase activity

Genes:

GO:0003755 - peptidyl-prolyl cis-trans isomerase activity

Genes:

GO:0090554 - phosphatidylcholine floppase activity

Genes:

GO:0004622 - phosphatidylcholine lysophospholipase A1 activity

Genes:

GO:0090556 - phosphatidylserine floppase activity

Genes:

GO:0004665 - prephenate dehydrogenase (NADP+) activity

Genes:

GO:0035241 - protein-arginine omega-N monomethyltransferase activity

Genes:

GO:0008999 - protein-N-terminal-alanine acetyltransferase activity

Genes:

GO:0004737 - pyruvate decarboxylase activity

Genes:

GO:0008121 - quinol-cytochrome-c reductase activity

Genes:

GO:0110153 - RNA NAD-cap (NMN-forming) hydrolase activity

Genes:

GO:0106388 - rRNA small subunit aminocarboxypropyltransferase activity

Genes:

GO:0106322 - S-(hydroxymethyl)glutathione dehydrogenase (NAD+) activity

Genes:

GO:0106321 - S-(hydroxymethyl)glutathione dehydrogenase (NADP+) activity

Genes:

GO:0080007 - S-nitrosoglutathione reductase (NADH) activity

Genes:

GO:0051266 - sirohydrochlorin ferrochelatase activity

Genes:

GO:0000121 - sn-glycerol 1-phosphatase activity

Genes:

GO:0106032 - snRNA pseudouridine synthase activity

Genes:

GO:0008177 - succinate dehydrogenase (quinone) activity

Genes:

GO:0036243 - succinate-semialdehyde dehydrogenase (NADP+) activity

Genes:

GO:0019166 - trans-2-enoyl-CoA reductase (NADPH) activity

Genes:

GO:0004806 - triacylglycerol lipase activity

Genes:

GO:0050354 - triokinase activity

Genes:

GO:0030697 - tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent

Genes:

GO:0141101 - tRNA(Ser) (uridine(44)-2'-O-ribose)-methyltransferase activity

Genes:

GO:0102521 - tRNA-4-demethylwyosine synthase activity

Genes:

GO:0004835 - tubulin-tyrosine ligase activity

Genes:

GO:0004849 - uridine kinase activity

Genes:

GO:0036221 - UTP diphosphatase activity

Genes:

GO:0102158 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activity

Genes:

GO:0141040 - very-long-chain 3-oxoacyl-CoA reductase activity

Genes: