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Reference - PB_REF:0000001 - Protein modification annotation by manual transfer of experimentally-verified annotation data to orthologs based on curator judgment of sequence features.

Reference summary

PubMed ID
PB_REF:0000001
Title
Protein modification annotation by manual transfer of experimentally-verified annotation data to orthologs based on curator judgment of sequence features.
Authors
PomBase curators
Abstract
Method for transferring PSI-MOD protein modification annotations to a protein-coding gene based on a curator's judgment of its similarity to a putative ortholog that has annotations that are supported by experimental evidence. Annotations are created when a curator judges that the protein sequence contains a match to a sequence region or motif that is known to be a consensus site for the modification, and when an ortholog has been identified and experimentally determined to have the modification.

Annotation

Modification

MOD:01885 - biotinylated residue

Genes:

MOD:00437 - farnesylated residue

Genes:

MOD:00441 - geranylgeranylated residue

Genes:

MOD:00693 - glycosylated residue

Genes:

MOD:00818 - glycosylphosphatidylinositolated residue

Genes:

MOD:00125 - hypusine

Genes:

MOD:00703 - isoprenylated residue

Genes:

MOD:00663 - methylated lysine

Genes:

MOD:00427 - methylated residue

Genes:

MOD:00394 - monoacetylated residue

Genes:

MOD:00351 - N-glycyl-1-(phosphatidyl)ethanolamine

Genes:

MOD:00127 - N6-lipoyl-L-lysine

Genes:

MOD:00440 - palmitoylated residue

Genes:

MOD:01149 - sumoylated lysine

Genes:

MOD:01148 - ubiquitinylated lysine

Genes: