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Reference - PMID:12193658 - Histone H3 lysine 4 methylation is mediated by Set1 and promotes maintenance of active chromatin states in fission yeast.

Reference summary

PubMed ID
PMID:12193658
Title
Histone H3 lysine 4 methylation is mediated by Set1 and promotes maintenance of active chromatin states in fission yeast.
Authors
Noma K, Grewal SI
Citation
Proc Natl Acad Sci U S A 2002 Dec 10;99 Suppl 4(Suppl 4):16438-45
Publication year
2002
Abstract
Methylation of histone H3 at lysine 4 (H3 Lys-4) or lysine 9 (H3 Lys-9) is known to define active and silent chromosomal domains respectively from fission yeast to humans. However, in budding yeast, H3 Lys-4 methylation is also necessary for silent chromatin assembly at telomeres and ribosomal DNA. Here we demonstrate that deletion of set1, which encodes a protein containing an RNA recognition motif at its amino terminus and a SET domain at the carboxy terminus, abolishes H3 Lys-4 methylation in fission yeast. Unlike in budding yeast, Set1-mediated H3 Lys-4 methylation is not required for heterochromatin assembly at the silent mating-type region and centromeres in fission yeast. Our analysis suggests that H3 Lys-4 methylation is a stable histone modification present throughout the cell cycle, including mitosis. The loss of H3 Lys-4 methylation in set1Delta cells is correlated with a decrease in histone H3 acetylation levels, suggesting a mechanistic link between H3 Lys-4 methylation and acetylation of the H3 tail. We suggest that methylation of H3 Lys-4 primarily acts in the maintenance of transcriptionally poised euchromatic domains, and that this modification is dispensable for heterochromatin formation in fission yeast, which instead utilizes H3 Lys-9 methylation.

Annotation

Comment

PBO:0005124 - Set1 mediated H3 K4 methylation is preferentially enriched at euchromatic loci

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GO molecular function

GO:0042800 - histone H3K4 methyltransferase activity

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Single locus phenotype

FYPO:0002917 - abolished histone H3-K4 methylation during vegetative growth

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FYPO:0000082 - decreased cell population growth at high temperature

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FYPO:0001458 - decreased histone H3-K14 acetylation during vegetative growth

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FYPO:0002366 - decreased histone H3-K4 methylation during vegetative growth

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FYPO:0001442 - decreased histone H3-K9 acetylation during vegetative growth

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FYPO:0005014 - decreased histone H4-K12 acetylation during vegetative growth

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FYPO:0005012 - decreased histone H4-K5 acetylation during vegetative growth

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FYPO:0005310 - increased histone H3-K14 acetylation during vegetative growth

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FYPO:0000892 - increased histone H3-K9 acetylation during vegetative growth

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FYPO:0005309 - increased histone H4-K5 acetylation during vegetative growth

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FYPO:0005308 - increased histone H4-K8 acetylation during vegetative growth

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FYPO:0005311 - normal histone H3-K4 methylation during vegetative growth

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FYPO:0003223 - normal histone H3-K9 acetylation during vegetative growth

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FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

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FYPO:0003234 - normal histone H3-K9 methylation at heterochromatin domain during vegetative growth

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FYPO:0004079 - normal histone H3-S10 phosphorylation during vegetative growth

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FYPO:0000472 - normal mating type switching

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FYPO:0005072 - normal protein localization to centromeric chromatin

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FYPO:0004378 - normal protein localization to heterochromatin at silent mating-type cassette

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FYPO:0000590 - normal sporulation

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FYPO:0001234 - slow vegetative cell population growth

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FYPO:0002177 - viable vegetative cell with normal cell morphology

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