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Reference - PMID:14528010 - Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast.

Reference summary

PubMed ID
PMID:14528010
Title
Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast.
Authors
Coulon S, Gaillard PHL, Chahwan C, McDonald WH, Yates JR, Russell P
Citation
Mol Biol Cell 2004 Jan;15(1):71-80
Publication year
2004
Abstract
In most eukaryotes, genes encoding ribosomal RNAs (rDNA) are clustered in long tandem head-to-tail repeats. Studies of Saccharomyces cerevisiae have indicated that rDNA copy number is maintained through recombination events associated with site-specific blockage of replication forks (RFs). Here, we describe two Schizosaccharomyces pombe proteins, homologs of S. cerevisiae Slx1 and Slx4, as subunits of a novel type of endonuclease that maintains rDNA copy number. The Slx1-Slx4-dependent endonuclease introduces single-strand cuts in duplex DNA on the 3' side of junctions with single-strand DNA. Deletion of Slx1 or Rqh1 RecQ-like DNA helicase provokes rDNA contraction, whereas simultaneous elimination of Slx1-Slx4 endonuclease and Rqh1 is lethal. Slx1 associates with chromatin at two foci characteristic of the two rDNA repeat loci in S. pombe. We propose a model in which the Slx1-Slx4 complex is involved in the control of the expansion and contraction of the rDNA loci by initiating recombination events at stalled RFs.

Annotation

GO biological process

GO:0043007 - maintenance of rDNA

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GO cellular component

GO:0030875 - rDNA protrusion

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GO molecular function

GO:0008821 - crossover junction DNA endonuclease activity

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GO:1990238 - double-stranded DNA endonuclease activity

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GO:0106332 - ds/ssDNA junction-specific dsDNA endonuclease activity

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GO:0005515 - protein binding

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Multi-locus phenotype

FYPO:0007140 - inviable after spore germination, multiple cell divisions, swollen, elongated cell

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FYPO:0002061 - inviable vegetative cell population

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FYPO:0000969 - normal growth during cellular response to UV

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FYPO:0000963 - normal growth on hydroxyurea

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FYPO:0001357 - normal vegetative cell population growth

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Single locus phenotype

FYPO:0007141 - abolished endodeoxyribonuclease activity

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FYPO:0002037 - decreased endodeoxyribonuclease activity

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Genotypes:

FYPO:0006494 - decreased rDNA copy number during vegetative growth

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Genotypes:

FYPO:0000969 - normal growth during cellular response to UV

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Genotypes:

FYPO:0000963 - normal growth on hydroxyurea

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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Genotypes: