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Reference - PMID:15292231 - Regulation of Swi6/HP1-dependent heterochromatin assembly by cooperation of components of the mitogen-activated protein kinase pathway and a histone deacetylase Clr6.

Reference summary

PubMed ID
PMID:15292231
Title
Regulation of Swi6/HP1-dependent heterochromatin assembly by cooperation of components of the mitogen-activated protein kinase pathway and a histone deacetylase Clr6.
Authors
Kim HS, Choi ES, Shin JA, Jang YK, Park SD
Citation
J Biol Chem 2004 Oct 08;279(41):42850-9
Publication year
2004
Abstract
A study of gene silencing within the mating-type region of fission yeast defines two distinct pathways responsible for the establishment of heterochromatin assembly. One is RNA interference-dependent and acts on centromere-homologous repeats (cenH). The other is a stochastic Swi6 (the fission yeast HP1 homolog)-dependent mechanism that is not fully understood. Here we find that activating transcription factor (Atf1) and Pcr1, the fission yeast bZIP transcription factors homologous to human ATF-2, are crucial for proper histone deacetylation of both H3 and H4. This deacetylation is a prerequisite for subsequent H3 lysine 9 methylation and Swi6-dependent heterochromatin assembly across the rest of the silent mating-type (mat) region lacking the RNA interference-dependent cenH repeat. Moreover, Atf1 and Pcr1 can form complexes with both a histone deacetylase, Clr6, and Swi6, and clr6 mutations affected the H3/H4 acetylation patterns, similar to the atf1 and pcr1 deletion mutant phenotypes at the endogenous mat loci and at the ctt1+ promoter region surrounding ATF/CRE-binding site. These data suggest that Atf1 and Pcr1 participate in an early step essential for heterochromatin assembly at the mat locus and silencing of transcriptional targets of Atf1. Furthermore, a phosphorylation event catalyzed by the conserved mitogen-activated protein kinase pathway is important for regulation of heterochromatin silencing by Atf1 and Pcr1. These findings suggest a role for the mitogen-activated protein kinase pathway and histone deacetylase in Swi6-based heterochromatin assembly.

Annotation

GO biological process

GO:0090055 - positive regulation of silent mating-type cassette heterochromatin formation

Genes:

GO:0030466 - silent mating-type cassette heterochromatin formation

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GO molecular function

GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific

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Multi-locus phenotype

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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Single locus phenotype

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0003571 - decreased histone H3-K9 methylation at silent mating-type cassette during vegetative growth

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FYPO:0006994 - increased chromatin silencing at centromere otr1L

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FYPO:0004542 - increased chromatin silencing at subtelomere

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FYPO:0007633 - increased histone H3-K14 acetylation at silent mating-type cassette during vegetative growth

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FYPO:0005063 - increased histone H3-K4 methylation at mating type locus during vegetative growth

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FYPO:0004690 - increased histone H3-K9 acetylation at silent mating-type cassette during vegetative growth

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FYPO:0008174 - increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth

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FYPO:0006752 - increased histone H4-K16 acetylation at subtelomeric heterochromatin during vegetative growth

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FYPO:0008172 - increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth

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FYPO:0008173 - increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth

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FYPO:0000780 - increased transcription during vegetative growth

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