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Reference - PMID:15607976 - Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

Reference summary

PubMed ID
PMID:15607976
Title
Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.
Authors
Motamedi MR, Verdel A, Colmenares SU, Gerber SA, Gygi SP, Moazed D
Citation
Cell 2004 Dec 17;119(6):789-802
Publication year
2004
Abstract
RNAi-mediated heterochromatin assembly in fission yeast requires the RNA-induced transcriptional silencing (RITS) complex and a putative RNA-directed RNA polymerase (Rdp1). Here we show that Rdp1 is associated with two conserved proteins, Hrr1, an RNA helicase, and Cid12, a member of the polyA polymerase family, in a complex that has RNA-directed RNA polymerase activity (RDRC, RNA-directed RNA polymerase complex). RDRC physically interacts with RITS in a manner that requires the Dicer ribonuclease (Dcr1) and the Clr4 histone methyltransferase. Moreover, both complexes are localized to the nucleus and associate with noncoding centromeric RNAs in a Dcr1-dependent manner. In cells lacking Rdp1, Hrr1, or Cid12, RITS complexes are devoid of siRNAs and fail to localize to centromeric DNA repeats to initiate heterochromatin assembly. These findings reveal a physical and functional link between Rdp1 and RITS and suggest that noncoding RNAs provide a platform for siRNA-dependent localization of RNAi complexes to specific chromosome regions.

Annotation

Comment

PBO:0000909 - RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner

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PBO:0015249 - RDRC and RITS complexes associate together, and with non-coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner

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PBO:0015263 - RDRC and RITS complexes associate together, and with noncoding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner

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GO biological process

GO:0140727 - siRNA-mediated pericentric heterochromatin formation

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GO cellular component

GO:0031934 - mating-type region heterochromatin

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GO:0031380 - nuclear RNA-directed RNA polymerase complex

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GO:0005634 - nucleus

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GO:0005721 - pericentric heterochromatin

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GO:0031379 - RNA-directed RNA polymerase complex

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GO molecular function

GO:0005515 - protein binding

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GO:0003724 - RNA helicase activity

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GO:0003968 - RNA-directed RNA polymerase activity

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Single locus phenotype

FYPO:0008235 - abolished nuclear RNA-directed RNA polymerase complex assembly

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FYPO:0000705 - abolished protein-protein interaction

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FYPO:0008011 - abolished siRNA loading onto RITS complex

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FYPO:0002834 - decreased chromatin silencing at centromere

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FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

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FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

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FYPO:0001645 - decreased protein-protein interaction

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FYPO:0008010 - decreased RNA-dependent RNA polymerase

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