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Reference - PMID:15829570 - Impairment of the TFIIH-associated CDK-activating kinase selectively affects cell cycle-regulated gene expression in fission yeast.

Reference summary

PubMed ID
PMID:15829570
Title
Impairment of the TFIIH-associated CDK-activating kinase selectively affects cell cycle-regulated gene expression in fission yeast.
Authors
Lee KM, Miklos I, Du H, Watt S, Szilagyi Z, Saiz JE, Madabhushi R, Penkett CJ, Sipiczki M, Bähler J, Fisher RP
Citation
Mol Biol Cell 2005 Jun;16(6):2734-45
Publication year
2005
Abstract
The fission yeast Mcs6-Mcs2-Pmh1 complex, homologous to metazoan Cdk7-cyclin H-Mat1, has dual functions in cell division and transcription: as a partially redundant cyclin-dependent kinase (CDK)-activating kinase (CAK) that phosphorylates the major cell cycle CDK, Cdc2, on Thr-167; and as the RNA polymerase (Pol) II carboxyl-terminal domain (CTD) kinase associated with transcription factor (TF) IIH. We analyzed conditional mutants of mcs6 and pmh1, which activate Cdc2 normally but cannot complete cell division at restrictive temperature and arrest with decreased CTD phosphorylation. Transcriptional profiling by microarray hybridization revealed only modest effects on global gene expression: a one-third reduction in a severe mcs6 mutant after prolonged incubation at 36 degrees C. In contrast, a small subset of transcripts ( approximately 5%) decreased by more than twofold after Mcs6 complex function was compromised. The signature of repressed genes overlapped significantly with those of cell separation mutants sep10 and sep15. Sep10, a component of the Pol II Mediator complex, becomes essential in mcs6 or pmh1 mutant backgrounds. Moreover, transcripts dependent on the forkhead transcription factor Sep1, which are expressed coordinately during mitosis, were repressed in Mcs6 complex mutants, and Mcs6 also interacts genetically with Sep1. Thus, the Mcs6 complex, a direct activator of Cdc2, also influences the cell cycle transcriptional program, possibly through its TFIIH-associated kinase function.

Annotation

Comment

PBO:0000206 - deletion mutant expression profiling

Genes:

GO biological process

GO:0006367 - transcription initiation at RNA polymerase II promoter

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GO cellular component

GO:0070985 - transcription factor TFIIK complex

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GO molecular function

GO:0061575 - cyclin-dependent protein serine/threonine kinase activator activity

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GO:0004693 - cyclin-dependent protein serine/threonine kinase activity

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GO:0008353 - RNA polymerase II CTD heptapeptide repeat kinase activity

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Multi-locus phenotype

FYPO:0001838 - decreased protein phosphorylation during vegetative growth

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Genotypes:

FYPO:0002430 - inviable after spore germination, multiple cell divisions

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Genotypes:

FYPO:0003413 - inviable branched, elongated, multiseptate vegetative cell

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FYPO:0004495 - inviable branched, swollen, elongated, multiseptate vegetative cell

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Single locus phenotype

FYPO:0005089 - abolished RNA polymerase II carboxy-terminal domain kinase activity

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Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

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Genotypes:

FYPO:0004903 - decreased level of cell separation after cytokinesis gene mRNA during vegetative growth

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Genotypes:

FYPO:0005090 - decreased level of cytokinesis gene mRNA during vegetative growth

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Genotypes:

FYPO:0004068 - decreased phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during vegetative growth

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Genotypes:

FYPO:0001324 - decreased protein level during vegetative growth

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Genotypes:

FYPO:0003836 - decreased RNA polymerase II carboxy-terminal domain kinase activity

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Genotypes:

FYPO:0005088 - inviable after spore germination, multiple cell divisions, binucleate septated cell

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0002888 - mitotic cell cycle arrest before cell separation

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FYPO:0001252 - multinucleate multiseptate vegetative cell

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FYPO:0001164 - normal growth on glucose carbon source

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FYPO:0004423 - normal protein threonine phosphorylation

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FYPO:0001317 - normal RNA level during vegetative growth

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