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Reference - PMID:16246721 - The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast.

Reference summary

PubMed ID
PMID:16246721
Title
The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast.
Authors
Yamada T, Fischle W, Sugiyama T, Allis CD, Grewal SI
Citation
Mol Cell 2005 Oct 28;20(2):173-85
Publication year
2005
Abstract
Posttranslational modifications of histones play an essential role in heterochromatin assembly. Whereas the role of Clr4/Suv39h-mediated methylation of histone H3 at lysine 9 (H3K9) in heterochromatin assembly is well studied, the exact function of histone deacetylases (HDACs) in this process is unclear. We show that Clr3, a fission yeast homolog of mammalian class II HDACs, acts in a distinct pathway parallel to RNAi-directed heterochromatin nucleation to recruit Clr4 and mediate H3K9 methylation at the silent mating-type region and centromeres. At the mat locus, Clr3 is recruited at a specific site through a mechanism involving ATF/CREB family proteins. Once recruited, Clr3 spreads across the 20 kb silenced domain that requires its own HDAC activity and heterochromatin proteins including Swi6/HP1. We also demonstrate that Clr3 contributes to heterochromatin maintenance by stabilizing H3K9 trimethylation and by preventing histone modifications associated with active transcription, and that it limits RNA polymerase II accessibility to naturally silenced repeats at heterochromatin domains.

Annotation

GO biological process

GO:0031508 - pericentric heterochromatin formation

Genes:

GO:0030466 - silent mating-type cassette heterochromatin formation

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GO cellular component

GO:0031934 - mating-type region heterochromatin

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GO molecular function

GO:0140463 - chromatin-protein adaptor activity

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Multi-locus phenotype

FYPO:0003097 - abolished histone H3-K9 methylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0008153 - abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth

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Genotypes:

Single locus phenotype

FYPO:0008157 - abnormal histone deacetylation at the silent mating-type locus during vegetative growth

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Genotypes:

FYPO:0008159 - abolished histone H3-S10 phosphorylation at the silent mating-type locus during vegetative growth

Genes:

Genotypes:

FYPO:0008153 - abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0005845 - decreased histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0003573 - decreased protein localization to heterochromatin at silent mating-type cassette

Genes:

Genotypes:

FYPO:0007891 - decreased spatial extent of mating-type region heterochromatin assembly

Genes:

Genotypes:

FYPO:0007633 - increased histone H3-K14 acetylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0008158 - increased histone H3-S10 phosphorylation at the silent mating-type locus during vegetative growth

Genes:

Genotypes: