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Reference - PMID:16797182 - Conserved ribonuclease, Eri1, negatively regulates heterochromatin assembly in fission yeast.

Reference summary

PubMed ID
PMID:16797182
Title
Conserved ribonuclease, Eri1, negatively regulates heterochromatin assembly in fission yeast.
Authors
Iida T, Kawaguchi R, Nakayama J
Citation
Curr Biol 2006 Jul 25;16(14):1459-64
Publication year
2006
Abstract
RNA interference (RNAi) is a conserved silencing mechanism that has widespread roles in RNA degradation, translational repression, and the epigenetic control of chromatin structure [1]. In fission yeast, heterochromatin assembly requires RNAi machinery and is initiated by small interference RNAs (siRNAs) derived from heterochromatic regions and by the RNA-induced transcriptional silencing (RITS) complex [2-7]. Although recent studies have been successful in uncovering the functions of effector complexes in the RNAi pathway [4, 5, 8-10], exactly how heterochromatic siRNAs are processed and function in assembling heterochromatin remains unclear. In this study we focused on a conserved ribonuclease, Eri1, which was originally identified as a negative regulator of RNAi in C. elegans [11], and show the importance of the Eri1 protein in RNAi-mediated heterochromatin assembly in fission yeast. Eri1 specifically degrades double-stranded siRNAs through two functional domains and represses the accumulation of cellular siRNAs in vivo. Deletion of eri1(+) causes an increase in siRNAs associated with the RITS complex and enhances heterochromatic silencing, which is accompanied by increased levels of histone H3-K9 methylation and the Swi6 protein. Our findings suggest that the fission yeast Eri1 controls the accumulation of heterochromatic siRNAs and negatively regulates the RNAi-mediated heterochromatin assembly.

Annotation

GO biological process

GO:0060906 - negative regulation of regulatory ncRNA-mediated heterochromatin formation

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GO cellular component

GO:0005737 - cytoplasm

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GO molecular function

GO:0003725 - double-stranded RNA binding

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GO:0032296 - double-stranded RNA-specific ribonuclease activity

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Protein features

PBO:0111804 - SAP domain

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Single locus phenotype

FYPO:0002133 - abolished protein-RNA interaction

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FYPO:0006301 - abolished ribonuclease activity

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FYPO:0001407 - decreased cell population growth on glucose carbon source

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FYPO:0003094 - decreased centromeric outer repeat transcript level

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FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0002842 - decreased protein localization to centromere outer repeat

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FYPO:0003822 - decreased ribonuclease activity

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FYPO:0000220 - increased centromeric outer repeat transcript level

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FYPO:0002836 - increased centromeric outer repeat transcript-derived siRNA level

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FYPO:0006299 - increased chromatin silencing at centromere outer repeat

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FYPO:0004376 - increased chromatin silencing at silent mating-type cassette

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FYPO:0000875 - increased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

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FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0003009 - increased protein localization to centromere outer repeat

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FYPO:0006300 - increased protein localization to heterochromatin at centromere inner repeat

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FYPO:0000833 - normal protein level during vegetative growth

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Warnings

PBO:0000070 - gene structure updated

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