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Reference - PMID:17222800 - Characterization and functional analysis of a novel double-guide C/D box snoRNA in the fission yeast.

Reference summary

PubMed ID
PMID:17222800
Title
Characterization and functional analysis of a novel double-guide C/D box snoRNA in the fission yeast.
Authors
Bi YZ, Qu LH, Zhou H
Citation
Biochem Biophys Res Commun 2007 Mar 02;354(1):302-8
Publication year
2007
Abstract
Ribose methylation of eukaryotic rRNA is directed by box C/D small nucleolar RNAs (snoRNAs), which pinpoint the nucleotide to be methylated in specific position within the rRNA sequence. Here, we report the identification of a novel double-guide C/D box snoRNA termed snR88 that directs methylation of two previously undetermined sites in 25S rRNA from the fission yeast. Knockout of the predicted TATA box of the snR88 gene resulted in the complete blocking of its expression, showing that snR88 is an independently transcribed gene and dispensable for yeast viability. The depletion of snR88 abolished 25S rRNA methylation at U2304 and U2497 simultaneously. Interestingly, an unusual pause of reverse transcription at U2495 was observed, which implies an unknown structure of 25S rRNA related to ribose methylation at U2497 in the fission yeast.

Annotation

GO biological process

GO:0000452 - snoRNA guided rRNA 2'-O-methylation

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GO molecular function

GO:0030562 - rRNA 2'-O-ribose methylation guide activity

Genes:

Single locus phenotype

FYPO:0003721 - normal growth on G418

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Genotypes:

FYPO:0000633 - sensitive to G418

Genes:

Genotypes:

FYPO:0003720 - snoRNA guided rRNA 2'-O-methylation abolished at specific site

Genes:

Genotypes: