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Reference - PMID:17289569 - SHREC, an effector complex for heterochromatic transcriptional silencing.

Reference summary

PubMed ID
PMID:17289569
Title
SHREC, an effector complex for heterochromatic transcriptional silencing.
Authors
Sugiyama T, Cam HP, Sugiyama R, Noma K, Zofall M, Kobayashi R, Grewal SI
Citation
Cell 2007 Feb 09;128(3):491-504
Publication year
2007
Abstract
Transcriptional gene silencing (TGS) is the mechanism generally thought by which heterochromatin effects silencing. However, recent discovery in fission yeast of a cis-acting posttranscriptional gene-silencing (cis-PTGS) pathway operated by the RNAi machinery at heterochromatin challenges the role of TGS in heterochromatic silencing. Here, we describe a multienzyme effector complex (termed SHREC) that mediates heterochromatic TGS in fission yeast. SHREC consists of a core quartet of proteins - Clr1, Clr2, Clr3, and Mit1 - which distribute throughout all major heterochromatin domains to effect TGS via distinct activities associated with the histone deacetylase Clr3 and the SNF2 chromatin-remodeling factor homolog Mit1. SHREC is also recruited to the telomeres by multiple independent mechanisms involving telomere binding protein Ccq1 cooperating with Taz1 and the RNAi machinery, and to euchromatic sites, via mechanism(s) distinct from its heterochromatin localization aided by Swi6/HP1. Our analyses suggest that SHREC regulates nucleosome positioning to assemble higher-order chromatin structures critical for heterochromatin functions.

Annotation

GO biological process

GO:0031508 - pericentric heterochromatin formation

Genes:

GO:0000183 - rDNA heterochromatin formation

Genes:

GO:0030466 - silent mating-type cassette heterochromatin formation

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GO:0031509 - subtelomeric heterochromatin formation

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GO cellular component

GO:0061638 - CENP-A containing chromatin

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GO:0099115 - chromosome, subtelomeric region

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GO:0000781 - chromosome, telomeric region

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GO:0031934 - mating-type region heterochromatin

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GO:0005634 - nucleus

Genes:

GO:0005721 - pericentric heterochromatin

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GO:0033553 - rDNA heterochromatin

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GO:0070824 - SHREC complex

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GO:0140720 - subtelomeric heterochromatin

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GO molecular function

GO:0016887 - ATP hydrolysis activity

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GO:0004407 - histone deacetylase activity

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GO:0141221 - histone deacetylase activity, hydrolytic mechanism

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GO:0060090 - molecular adaptor activity

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Multi-locus phenotype

FYPO:0005396 - abolished protein localization to subtelomeric heterochromatin

Genes:

Genotypes:

FYPO:0005918 - decreased protein localization to subtelomeric heterochromatin

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Genotypes:

Single locus phenotype

FYPO:0000853 - abnormal nucleosome positioning

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Genotypes:

FYPO:0001168 - decreased ATPase activity

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Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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Genotypes:

FYPO:0003216 - decreased chromatin silencing at rDNA

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Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

Genes:

Genotypes:

FYPO:0003704 - decreased histone deacetylase activity

Genes:

Genotypes:

FYPO:0005918 - decreased protein localization to subtelomeric heterochromatin

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Genotypes:

FYPO:0002836 - increased centromeric outer repeat transcript-derived siRNA level

Genes:

Genotypes:

FYPO:0000966 - increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0003011 - increased protein localization to chromatin during vegetative growth

Genes:

Genotypes:

FYPO:0007278 - normal protein localization to euchromatin

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Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

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Genotypes:

FYPO:0003576 - normal protein localization to subtelomeric heterochromatin

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Genotypes: