PomBase home

Reference - PMID:17446861 - Specific functions for the fission yeast Sirtuins Hst2 and Hst4 in gene regulation and retrotransposon silencing.

Reference summary

PubMed ID
PMID:17446861
Title
Specific functions for the fission yeast Sirtuins Hst2 and Hst4 in gene regulation and retrotransposon silencing.
Authors
Durand-Dubief M, Sinha I, Fagerström-Billai F, Bonilla C, Wright A, Grunstein M, Ekwall K
Citation
EMBO J 2007 May 16;26(10):2477-88
Publication year
2007
Abstract
Expression profiling, ChiP-CHIP and phenotypic analysis were used to investigate the functional relationships of class III NAD(+)-dependent HDACs (Sirtuins) in fission yeast. We detected significant histone acetylation increases in Sirtuin mutants at their specific genomic binding targets and were thus able to identify an in vivo substrate preference for each Sirtuin. At heterochromatic loci, we demonstrate that although Hst2 is mainly cytoplasmic, a nuclear pool of Hst2 colocalizes with the other Sirtuins at silent regions (cen, mat, tel, rDNA), and that like the other Sirtuins, Hst2 is required for rDNA and centromeric silencing. Interestingly we found specific functions for the fission yeast Sirtuins Hst2 and Hst4 in gene regulation. Hst2 directly represses genes involved in transport and membrane function, whereas Hst4 represses amino-acid biosynthesis genes and Tf2 retrotransposons. A specific role for Hst4 in Tf2 5' mRNA processing was revealed. Thus, Sirtuins share functions at many genomic targets, but Hst2 and Hst4 have also evolved unique functions in gene regulation.

Annotation

GO biological process

GO:0000122 - negative regulation of transcription by RNA polymerase II

Genes:

GO:0031508 - pericentric heterochromatin formation

Genes:

GO:0000183 - rDNA heterochromatin formation

Genes:

GO cellular component

GO:0000785 - chromatin

Genes:

GO:0099115 - chromosome, subtelomeric region

Genes:

GO:0005737 - cytoplasm

Genes:

GO:0031934 - mating-type region heterochromatin

Genes:

GO:0005721 - pericentric heterochromatin

Genes:

GO:0033553 - rDNA heterochromatin

Genes:

GO molecular function

GO:0032041 - histone H3K14 deacetylase activity, NAD-dependent

Genes:

GO:0046969 - histone H3K9 deacetylase activity, NAD-dependent

Genes:

GO:0046970 - histone H4K16 deacetylase activity, NAD-dependent

Genes:

Multi-locus phenotype

FYPO:0000080 - decreased cell population growth at low temperature

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes:

Single locus phenotype

FYPO:0004492 - abnormal RNA 5'-end processing

Genes:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

Genes:

Genotypes:

FYPO:0003217 - decreased chromatin silencing at centromere central core

Genes:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0003216 - decreased chromatin silencing at rDNA

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

Genes:

Genotypes:

FYPO:0004491 - decreased nucleosome occupancy

Genes:

Genotypes:

FYPO:0000332 - increased histone acetylation during vegetative growth

Genes:

Genotypes:

FYPO:0004489 - increased level of amino acid biosynthesis gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0002173 - increased level of meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0004490 - increased level of transport gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0000969 - normal growth during cellular response to UV

Genes:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

Genes:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes:

FYPO:0000268 - sensitive to UV during vegetative growth

Genes:

Genotypes: