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Reference - PMID:17450151 - Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection.

Reference summary

PubMed ID
PMID:17450151
Title
Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection.
Authors
Nicolas E, Yamada T, Cam HP, Fitzgerald PC, Kobayashi R, Grewal SI
Citation
Nat Struct Mol Biol 2007 May;14(5):372-80
Publication year
2007
Abstract
Histone acetylation is important in regulating DNA accessibility. Multifunctional Sin3 proteins bind histone deacetylases (HDACs) to assemble silencing complexes that selectively target chromatin. We show that, in fission yeast, an essential HDAC, Clr6, exists in two distinct Sin3 core complexes. Complex I contains an essential Sin3 homolog, Pst1, and other factors, and predominantly targets gene promoters. Complex II contains a nonessential Sin3 homolog, Pst2, and several conserved proteins. It preferentially targets transcribed chromosomal regions and centromere cores. Defects in complex II abrogate global protective functions of chromatin, causing increased accessibility of DNA to genotoxic agents and widespread antisense transcripts that are processed by the exosome. Notably, the two Clr6 complexes differentially repress forward and reverse centromeric repeat transcripts, suggesting that these complexes regulate transcription in heterochromatin and euchromatin in similar manners, including suppression of spurious transcripts from cryptic start sites.

Annotation

GO cellular component

GO:0033698 - Rpd3L complex

Genes:

GO:0032221 - Rpd3S complex

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Multi-locus phenotype

FYPO:0003557 - increased antisense RNA level

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Genotypes:

FYPO:0005522 - increased forward centromeric outer repeat transcript level

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FYPO:0001886 - meiotic cell cycle entry and sporulation in haploid

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Single locus phenotype

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

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Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

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Genotypes:

FYPO:0004137 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

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Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

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Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0003557 - increased antisense RNA level

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FYPO:0005315 - increased chromatin silencing at centromere central core

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FYPO:0003547 - increased DNA damage during vegetative growth

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Genotypes:

FYPO:0005522 - increased forward centromeric outer repeat transcript level

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Genotypes:

FYPO:0007636 - increased histone H3-K9 acetylation at promoter during vegetative growth

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Genotypes:

FYPO:0004347 - increased histone H3-K9 acetylation at protein coding gene during vegetative growth

Genes:

Genotypes:

FYPO:0000892 - increased histone H3-K9 acetylation during vegetative growth

Genes:

Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006987 - increased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0006361 - increased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

Genes:

Genotypes:

FYPO:0005523 - increased reverse centromeric outer repeat transcript level

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

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FYPO:0000969 - normal growth during cellular response to UV

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FYPO:0003906 - normal growth on bleomycin

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FYPO:0001690 - normal growth on camptothecin

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FYPO:0000963 - normal growth on hydroxyurea

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FYPO:0000957 - normal growth on methyl methanesulfonate

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FYPO:0001357 - normal vegetative cell population growth

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FYPO:0000095 - sensitive to bleomycin

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FYPO:0000085 - sensitive to camptothecin

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FYPO:0000088 - sensitive to hydroxyurea

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FYPO:0000089 - sensitive to methyl methanesulfonate

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Genotypes:

FYPO:0000268 - sensitive to UV during vegetative growth

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Genotypes: