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Reference - PMID:17512405 - RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing.

Reference summary

PubMed ID
PMID:17512405
Title
RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing.
Authors
Bühler M, Haas W, Gygi SP, Moazed D
Citation
Cell 2007 May 18;129(4):707-21
Publication year
2007
Abstract
In fission yeast, the RNAi pathway is required for heterochromatin-dependent silencing of transgene insertions at centromeric repeats and acts together with other pathways to silence transgenes at the silent mating-type locus. Here, we show that transgene transcripts at centromeric repeats are processed into siRNAs and are therefore direct targets of RNAi. Furthermore, we show that Cid14, a member of the Trf4/5 family of poly(A) polymerases, has poly(A) polymerase activity that is required for heterochromatic gene silencing. Surprisingly, while siRNA levels in cid14Delta cells are dramatically reduced, the structural integrity of heterochromatin appears to be preserved. Cid14 resides in a complex similar to the TRAMP complex found in budding yeast, which is part of a nuclear surveillance mechanism that degrades aberrant transcripts. Our findings indicate that polyadenylation by a TRAMP-like complex contributes to robust silencing of heterochromatic genes in fission yeast via the recruitment of the exosome and/or the RNAi machinery.

Annotation

GO biological process

GO:0033562 - co-transcriptional gene silencing by RNA interference machinery

Genes:

GO:0140746 - siRNA catabolic process

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GO cellular component

GO:0031499 - TRAMP complex

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GO molecular function

GO:1990817 - poly(A) RNA polymerase activity

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GO:0035197 - siRNA binding

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GO:0033895 - ribonuclease [poly-(U)-specific] activity

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Multi-locus phenotype

FYPO:0007334 - abolished chromatin silencing at centromere outer repeat

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Single locus phenotype

FYPO:0007335 - abolished chromatin silencing at centromere inner repeat

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Genotypes:

FYPO:0007334 - abolished chromatin silencing at centromere outer repeat

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Genotypes:

FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

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FYPO:0008056 - abolished poly(A)-specific ribonuclease activity

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FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

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FYPO:0002834 - decreased chromatin silencing at centromere

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FYPO:0004604 - decreased chromatin silencing at subtelomere

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FYPO:0003231 - decreased histone H3-K9 methylation at heterochromatin domain during vegetative growth

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FYPO:0004982 - increased centromeric transcript level

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FYPO:0004573 - increased telomeric transcript level

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FYPO:0002335 - normal chromatin silencing

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Genotypes:

FYPO:0006995 - normal chromatin silencing at centromere inner repeat

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Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

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Genotypes:

FYPO:0004378 - normal protein localization to heterochromatin at silent mating-type cassette

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Genotypes:

FYPO:0003576 - normal protein localization to subtelomeric heterochromatin

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Genotypes: