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Reference - PMID:17927811 - Transcriptional regulatory network for sexual differentiation in fission yeast.

Reference summary

PubMed ID
PMID:17927811
Title
Transcriptional regulatory network for sexual differentiation in fission yeast.
Authors
Mata J, Wilbrey A, Bähler J
Citation
Genome Biol 2007;8(10):R217
Publication year
2007
Abstract
Changes in gene expression are hallmarks of cellular differentiation. Sexual differentiation in fission yeast (Schizosaccharomyces pombe) provides a model system for gene expression programs accompanying and driving cellular specialization. The expression of hundreds of genes is modulated in successive waves during meiosis and sporulation in S. pombe, and several known transcription factors are critical for these processes. We used DNA microarrays to investigate meiotic gene regulation by examining transcriptomes after genetic perturbations (gene deletion and/or overexpression) of rep1, mei4, atf21 and atf31, which encode known transcription factors controlling sexual differentiation. This analysis reveals target genes at a genome-wide scale and uncovers combinatorial control by Atf21p and Atf31p. We also studied two transcription factors not previously implicated in sexual differentiation whose meiotic induction depended on Mei4p: Rsv2p induces stress-related genes during spore formation, while Rsv1p represses glucose-metabolism genes. Our data further reveal negative feedback interactions: both Rep1p and Mei4p not only activate specific gene expression waves (early and middle genes, respectively) but are also required for repression of genes induced in the previous waves (Ste11p-dependent and early genes, respectively). These data give insight into regulatory principles controlling the extensive gene expression program driving sexual differentiation and highlight sophisticated interactions and combinatorial control among transcription factors. Besides triggering simultaneous expression of gene waves, transcription factors also repress genes in the previous wave and induce other factors that in turn regulate a subsequent wave. These dependencies ensure an ordered and timely succession of transcriptional waves during cellular differentiation.

Annotation

Comment

PBO:0000206 - deletion mutant expression profiling

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GO biological process

GO:0006357 - regulation of transcription by RNA polymerase II

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GO molecular function

GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific

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GO:0000978 - RNA polymerase II cis-regulatory region sequence-specific DNA binding

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Multi-locus phenotype

FYPO:0005127 - increased level of late meiotic gene mRNA during vegetative growth

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Single locus phenotype

FYPO:0005121 - decreased level of early meiotic gene mRNA during meiotic cell cycle

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FYPO:0005123 - decreased level of late meiotic gene mRNA during meiotic cell cycle

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FYPO:0005122 - decreased level of middle meiotic gene mRNA during meiotic cell cycle

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FYPO:0002959 - decreased RNA level during meiosis

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FYPO:0004750 - elongated septated vegetative cell

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FYPO:0001122 - elongated vegetative cell

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FYPO:0005126 - increased level of carbohydrate metabolism gene mRNA during meiotic cell cycle

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FYPO:0005124 - increased level of early meiotic gene mRNA during late meiosis

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FYPO:0005129 - increased level of heat shock gene mRNA during vegetative growth

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FYPO:0005128 - increased level of middle meiotic gene mRNA during vegetative growth

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FYPO:0005125 - increased level of nitrogen starvation gene mRNA during meiotic cell cycle

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FYPO:0002664 - increased level of stress responsive gene mRNA during vegetative growth

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FYPO:0004993 - normal spore germination frequency

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FYPO:0000943 - normal spore morphology

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FYPO:0001315 - normal vegetative cell morphology

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FYPO:0001357 - normal vegetative cell population growth

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FYPO:0000647 - vegetative cell lysis

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FYPO:0006822 - viable small vegetative cell with normal cell growth rate

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