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Reference - PMID:18622392 - Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast.

Reference summary

PubMed ID
PMID:18622392
Title
Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast.
Authors
Monahan BJ, Villén J, Marguerat S, Bähler J, Gygi SP, Winston F
Citation
Nat Struct Mol Biol 2008 Aug;15(8):873-80
Publication year
2008
Abstract
SWI/SNF chromatin-remodeling complexes have crucial roles in transcription and other chromatin-related processes. The analysis of the two members of this class in Saccharomyces cerevisiae, SWI/SNF and RSC, has heavily contributed to our understanding of these complexes. To understand the in vivo functions of SWI/SNF and RSC in an evolutionarily distant organism, we have characterized these complexes in Schizosaccharomyces pombe. Although core components are conserved between the two yeasts, the compositions of S. pombe SWI/SNF and RSC differ from their S. cerevisiae counterparts and in some ways are more similar to metazoan complexes. Furthermore, several of the conserved proteins, including actin-like proteins, are markedly different between the two yeasts with respect to their requirement for viability. Finally, phenotypic and microarray analyses identified widespread requirements for SWI/SNF and RSC on transcription including strong evidence that SWI/SNF directly represses iron-transport genes.

Annotation

Comment

PBO:0000206 - deletion mutant expression profiling

Genes:

GO biological process

GO:0006357 - regulation of transcription by RNA polymerase II

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GO cellular component

GO:0000785 - chromatin

Genes:

GO:0016586 - RSC-type complex

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GO:0016514 - SWI/SNF complex

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Multi-locus phenotype

FYPO:0000141 - abnormal mitotic sister chromatid segregation

Genes:

Genotypes:

FYPO:0003203 - curved septum

Genes:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

Genes:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

Genes:

Genotypes:

FYPO:0001122 - elongated vegetative cell

Genes:

Genotypes:

FYPO:0005005 - increased level of hexose transport gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0000067 - resistance to brefeldin A

Genes:

Genotypes:

FYPO:0000094 - sensitive to benomyl

Genes:

Genotypes:

FYPO:0000097 - sensitive to caffeine during vegetative growth

Genes:

Genotypes:

FYPO:0000785 - sensitive to formamide

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes:

FYPO:0002060 - viable vegetative cell population

Genes:

Genotypes:

Single locus phenotype

FYPO:0000141 - abnormal mitotic sister chromatid segregation

Genes:

Genotypes:

FYPO:0002023 - abnormal septum morphology during vegetative growth

Genes:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

Genes:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

Genes:

Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

Genes:

Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0001122 - elongated vegetative cell

Genes:

Genotypes:

FYPO:0005005 - increased level of hexose transport gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0002742 - increased level of iron transport gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

Genes:

Genotypes:

FYPO:0000064 - resistance to 2-deoxyglucose

Genes:

Genotypes:

FYPO:0000067 - resistance to brefeldin A

Genes:

Genotypes:

FYPO:0000094 - sensitive to benomyl

Genes:

Genotypes:

FYPO:0000097 - sensitive to caffeine during vegetative growth

Genes:

Genotypes:

FYPO:0000785 - sensitive to formamide

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes:

FYPO:0002060 - viable vegetative cell population

Genes:

Genotypes: