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Reference - PMID:19328067 - TFIIH and P-TEFb coordinate transcription with capping enzyme recruitment at specific genes in fission yeast.

Reference summary

PubMed ID
PMID:19328067
Title
TFIIH and P-TEFb coordinate transcription with capping enzyme recruitment at specific genes in fission yeast.
Authors
Viladevall L, St Amour CV, Rosebrock A, Schneider S, Zhang C, Allen JJ, Shokat KM, Schwer B, Leatherwood JK, Fisher RP
Citation
Mol Cell 2009 Mar 27;33(6):738-51
Publication year
2009
Abstract
Cyclin-dependent kinases (CDKs) are subunits of transcription factor (TF) IIH and positive transcription elongation factor b (P-TEFb). To define their functions, we mutated the TFIIH-associated kinase Mcs6 and P-TEFb homologs Cdk9 and Lsk1 of fission yeast, making them sensitive to inhibition by bulky purine analogs. Selective inhibition of Mcs6 or Cdk9 blocks cell division, alters RNA polymerase (Pol) II carboxyl-terminal domain (CTD) phosphorylation, and represses specific, overlapping subsets of transcripts. At a common target gene, both CDKs must be active for normal Pol II occupancy, and Spt5-a CDK substrate and regulator of elongation-accumulates disproportionately to Pol II when either kinase is inhibited. In contrast, Mcs6 activity is sufficient-and necessary-to recruit the Cdk9/Pcm1 (mRNA cap methyltransferase) complex. In vitro, phosphorylation of the CTD by Mcs6 stimulates subsequent phosphorylation by Cdk9. We propose that TFIIH primes the CTD and promotes recruitment of P-TEFb/Pcm1, serving to couple elongation and capping of select pre-mRNAs.

Annotation

Comment

PBO:0000716 - target genes transcriptionally co-regulated by Cdk9

Genes:

PBO:0000715 - target genes transcriptionally co-regulated by Mcs6

Genes:

GO biological process

GO:0006370 - 7-methylguanosine mRNA capping

Genes:

GO:0032968 - positive regulation of transcription elongation by RNA polymerase II

Genes:

GO:0060261 - positive regulation of transcription initiation by RNA polymerase II

Genes:

GO:0006368 - transcription elongation by RNA polymerase II

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GO molecular function

GO:0004693 - cyclin-dependent protein serine/threonine kinase activity

Genes:

GO:0140834 - RNA polymerase II CTD heptapeptide repeat S2 kinase activity

Genes:

GO:0140836 - RNA polymerase II CTD heptapeptide repeat S5 kinase activity

Genes:

Modification

MOD:00046 - O-phospho-L-serine

Genes:

MOD:00696 - phosphorylated residue

Genes:

Single locus phenotype

FYPO:0001971 - abnormal cell separation after cytokinesis resulting in chained cells

Genes:

Genotypes:

FYPO:0004069 - abolished phosphorylation of RNA polymerase II C-terminal domain serine 2 residues

Genes:

Genotypes:

FYPO:0004067 - decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during vegetative growth

Genes:

Genotypes:

FYPO:0004068 - decreased phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during vegetative growth

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Genotypes:

FYPO:0004161 - decreased protein localization to chromatin at RNA polymerase II-transcribed genes during vegetative growth

Genes:

Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0003836 - decreased RNA polymerase II carboxy-terminal domain kinase activity

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

FYPO:0001509 - normal protein localization to chromatin during vegetative growth

Genes:

Genotypes: