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Reference - PMID:19798055 - Failed gene conversion leads to extensive end processing and chromosomal rearrangements in fission yeast.

Reference summary

PubMed ID
PMID:19798055
Title
Failed gene conversion leads to extensive end processing and chromosomal rearrangements in fission yeast.
Authors
Tinline-Purvis H, Savory AP, Cullen JK, Davé A, Moss J, Bridge WL, Marguerat S, Bähler J, Ragoussis J, Mott R, Walker CA, Humphrey TC
Citation
EMBO J 2009 Nov 04;28(21):3400-12
Publication year
2009
Abstract
Loss of heterozygosity (LOH), a causal event in cancer and human genetic diseases, frequently encompasses multiple genetic loci and whole chromosome arms. However, the mechanisms by which such extensive LOH arises, and how it is suppressed in normal cells is poorly understood. We have developed a genetic system to investigate the mechanisms of DNA double-strand break (DSB)-induced extensive LOH, and its suppression, using a non-essential minichromosome, Ch(16), in fission yeast. We find extensive LOH to arise from a new break-induced mechanism of isochromosome formation. Our data support a model in which Rqh1 and Exo1-dependent end processing from an unrepaired DSB leads to removal of the broken chromosome arm and to break-induced replication of the intact arm from the centromere, a considerable distance from the initial lesion. This process also promotes genome-wide copy number variation. A genetic screen revealed Rhp51, Rhp55, Rhp57 and the MRN complex to suppress both isochromosome formation and chromosome loss, in accordance with these events resulting from extensive end processing associated with failed homologous recombination repair.

Annotation

Multi-locus phenotype

FYPO:0005943 - decreased break-induced loss of heterozygosity via chromosomal translocation

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FYPO:0000185 - decreased gene conversion during vegetative growth

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FYPO:0005452 - increased break-induced loss of heterozygosity

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FYPO:0005944 - increased break-induced loss of heterozygosity via chromosomal truncation

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FYPO:0003584 - increased double-strand break repair via nonhomologous end joining

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Single locus phenotype

FYPO:0005451 - decreased break-induced loss of heterozygosity

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FYPO:0004287 - decreased double-strand break repair via nonhomologous end joining

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FYPO:0000185 - decreased gene conversion during vegetative growth

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FYPO:0003913 - decreased minichromosome loss during vegetative growth

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FYPO:0005452 - increased break-induced loss of heterozygosity

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FYPO:0003584 - increased double-strand break repair via nonhomologous end joining

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FYPO:0001840 - increased minichromosome loss during vegetative growth

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FYPO:0005945 - normal frequency of break-induced loss of heterozygosity

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FYPO:0000089 - sensitive to methyl methanesulfonate

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