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Reference - PMID:20299449 - A chromodomain switch mediated by histone H3 Lys 4 acetylation regulates heterochromatin assembly.

Reference summary

PubMed ID
PMID:20299449
Title
A chromodomain switch mediated by histone H3 Lys 4 acetylation regulates heterochromatin assembly.
Authors
Xhemalce B, Kouzarides T
Citation
Genes Dev 2010 Apr 01;24(7):647-52
Publication year
2010
Abstract
Chromodomain proteins (Chp1/Chp2/Swi6/Clr4) bind to methylated H3K9 (H3K9me) and regulate pericentric heterochromatin in fission yeast. Chp1 and Clr4 (H3K9-HMT), bind transcriptionally active heterochromatin, whereas Chp2/Swi6 (HP1 homologs) are recruited during the inactive state. We show that H3K4 acetylation (H3K4ac) plays a role in the transition of dimethylated H3K9 (H3K9me2) occupancy from Chp1/Clr4 to Chp2/Swi6. H3K4ac, mediated by Mst1, is enriched at pericentromeres concomitantly with heterochromatin reassembly. H3K4R (Lys --> Arg) mutation increases Chp1 and decreases Chp2/Swi6 pericentric occupancy and exhibits centromeric desilencing. Consistent with structural data, H3K4ac specifically reduces Chp1/Clr4 affinity to H3K9me. We propose that H3K4ac mediates a chromodomain switch from Chp1/Clr4 to Swi6/Chp2 to allow heterochromatin reassembly.

Annotation

GO biological process

GO:0031453 - positive regulation of heterochromatin formation

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GO cellular component

GO:0005721 - pericentric heterochromatin

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GO molecular function

GO:0140463 - chromatin-protein adaptor activity

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GO:0004402 - histone acetyltransferase activity

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GO:0044016 - histone H3K4 acetyltransferase activity

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GO:0141222 - histone H3K4 deacetylase activity, NAD-dependent

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Modification

MOD:00723 - N-acetylated L-lysine

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Multi-locus phenotype

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

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Genotypes:

FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

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FYPO:0002837 - normal centromeric outer repeat transcript-derived siRNA level

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Single locus phenotype

FYPO:0002835 - centromeric outer repeat transcript-derived siRNA absent

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Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0004239 - decreased histone H3-K4 acetylation during vegetative growth

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FYPO:0004240 - decreased histone H3-K56 acetylation during vegetative growth

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FYPO:0001442 - decreased histone H3-K9 acetylation during vegetative growth

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FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

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Genotypes:

FYPO:0008270 - increased H3-K56 acetylation during vegetative growth

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FYPO:0004238 - increased histone H3-K4 acetylation during vegetative growth

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FYPO:0000892 - increased histone H3-K9 acetylation during vegetative growth

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Genotypes:

FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

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Genotypes:

FYPO:0002837 - normal centromeric outer repeat transcript-derived siRNA level

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Genotypes:

FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

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