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Reference - PMID:20435771 - Iron-dependent remodeling of fungal metabolic pathways associated with ferrichrome biosynthesis.

Reference summary

PubMed ID
PMID:20435771
Title
Iron-dependent remodeling of fungal metabolic pathways associated with ferrichrome biosynthesis.
Authors
Mercier A, Labbé S
Citation
Appl Environ Microbiol 2010 Jun;76(12):3806-17
Publication year
2010
Abstract
The fission yeast Schizosaccharomyces pombe excretes and accumulates the hydroxamate-type siderophore ferrichrome. The sib1(+) and sib2(+) genes encode, respectively, a siderophore synthetase and an l-ornithine N(5)-oxygenase that participate in ferrichrome biosynthesis. In the present report, we demonstrate that sib1(+) and sib2(+) are repressed by the GATA-type transcriptional repressor Fep1 in response to high levels of iron. We further found that the loss of Fep1 results in increased ferrichrome production. We showed that a sib1Delta sib2Delta mutant strain exhibits a severe growth defect on iron-poor media. We determined that two metabolic pathways are involved in biosynthesis of ornithine, an obligatory precursor of ferrichrome. Ornithine is produced by hydrolysis of arginine by the Car1 and Car3 proteins. Although car3(+) was constitutively expressed, car1(+) transcription levels were repressed upon exposure to iron, with a concomitant decrease of Car1 arginase activity. Ornithine is also generated by transformation of glutamate, which itself is produced by two separate biosynthetic pathways which are transcriptionally regulated by iron in an opposite fashion. In one pathway, the glutamate dehydrogenase Gdh1, which produces glutamate from 2-ketoglutarate, was repressed under iron-replete conditions in a Fep1-dependent manner. The other pathway involves two coupled enzymes, glutamine synthetase Gln1 and Fe-S cluster-containing glutamate synthase Glt1, which were both repressed under iron-limiting conditions but were expressed under iron-replete conditions. Collectively, these results indicate that under conditions of iron deprivation, yeast remodels metabolic pathways linked to ferrichrome synthesis in order to limit iron utilization without compromising siderophore production and its ability to sequester iron from the environment.

Annotation

GO biological process

GO:0010106 - cellular response to iron ion starvation

Genes:

GO:0031169 - ferrichrome biosynthetic process

Genes:

GO:0006527 - L-arginine catabolic process

Genes:

GO:1905569 - negative regulation of ferrichrome biosynthetic process

Genes:

GO:0000050 - urea cycle

Genes:

GO molecular function

GO:0004053 - arginase activity

Genes:

GO:0001227 - DNA-binding transcription repressor activity, RNA polymerase II-specific

Genes:

Multi-locus phenotype

FYPO:0005732 - abolished arginase activity

Genes:

Genotypes:

FYPO:0001723 - ferrichrome absent from cell

Genes:

Genotypes:

FYPO:0001814 - normal cell population growth during iron starvation

Genes:

Genotypes:

FYPO:0002015 - sensitive to iron ion starvation

Genes:

Genotypes:

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

Genes:

Single locus phenotype

FYPO:0005731 - decreased arginase activity

Genes:

Genotypes:

FYPO:0005734 - decreased glutamate dehydrogenase (NADP+) activity during cellular response to iron ion starvation

Genes:

Genotypes:

FYPO:0000035 - growth auxotrophic for arginine

Genes:

Genotypes:

FYPO:0005729 - increased cellular ferrichrome level

Genes:

Genotypes:

FYPO:0005733 - increased glutamate-ammonia ligase activity during cellular response to iron ion starvation

Genes:

Genotypes:

FYPO:0002014 - increased RNA level during cellular response to iron ion starvation

Genes:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0002015 - sensitive to iron ion starvation

Genes:

Genotypes: