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Reference - PMID:21215368 - The Cul4-Ddb1(Cdt)² ubiquitin ligase inhibits invasion of a boundary-associated antisilencing factor into heterochromatin.

Reference summary

PubMed ID
PMID:21215368
Title
The Cul4-Ddb1(Cdt)² ubiquitin ligase inhibits invasion of a boundary-associated antisilencing factor into heterochromatin.
Authors
Braun S, Garcia JF, Rowley M, Rougemaille M, Shankar S, Madhani HD
Citation
Cell 2011 Jan 07;144(1):41-54
Publication year
2011
Abstract
Partitioning of chromosomes into euchromatic and heterochromatic domains requires mechanisms that specify boundaries. The S. pombe JmjC family protein Epe1 prevents the ectopic spread of heterochromatin and is itself concentrated at boundaries. Paradoxically, Epe1 is recruited to heterochromatin by HP1 silencing factors that are distributed throughout heterochromatin. We demonstrate here that the selective enrichment of Epe1 at boundaries requires its regulation by the conserved Cul4-Ddb1(Cdt)² ubiquitin ligase, which directly recognizes Epe1 and promotes its polyubiquitylation and degradation. Strikingly, in cells lacking the ligase, Epe1 persists in the body of heterochromatin thereby inducing a defect in gene silencing. Epe1 is the sole target of the Cul4-Ddb1(Cdt)² complex whose destruction is necessary for the preservation of heterochromatin. This mechanism acts parallel with phosphorylation of HP1/Swi6 by CK2 to restrict Epe1. We conclude that the ubiquitin-dependent sculpting of the chromosomal distribution of an antisilencing factor is critical for heterochromatin boundaries to form correctly.

Annotation

GO biological process

GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process

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Multi-locus phenotype

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0004604 - decreased chromatin silencing at subtelomere

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FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0004137 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

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FYPO:0004545 - decreased proteasomal ubiquitin-dependent protein degradation

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FYPO:0000846 - decreased protein degradation during vegetative growth

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FYPO:0004066 - increased protein localization to chromatin at protein coding gene

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FYPO:0004377 - increased protein localization to heterochromatin at silent mating-type cassette

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FYPO:0004380 - increased protein localization to pericentric heterochromatin during vegetative growth

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FYPO:0003010 - increased protein localization to subtelomeric heterochromatin during vegetative growth

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FYPO:0006995 - normal chromatin silencing at centromere inner repeat

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FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

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FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0002358 - normal histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

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FYPO:0006429 - normal histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

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FYPO:0004378 - normal protein localization to heterochromatin at silent mating-type cassette

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Single locus phenotype

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0004604 - decreased chromatin silencing at subtelomere

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FYPO:0003573 - decreased protein localization to heterochromatin at silent mating-type cassette

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FYPO:0008422 - decreased protein localization to pericentric heterochromatin

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FYPO:0002387 - decreased protein localization to subtelomeric heterochromatin during vegetative growth

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FYPO:0004541 - increased chromatin silencing at centromere inner repeat

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FYPO:0006299 - increased chromatin silencing at centromere outer repeat

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FYPO:0004376 - increased chromatin silencing at silent mating-type cassette

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FYPO:0004380 - increased protein localization to pericentric heterochromatin during vegetative growth

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FYPO:0006995 - normal chromatin silencing at centromere inner repeat

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FYPO:0004742 - normal chromatin silencing at centromere outer repeat

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FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

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FYPO:0003555 - normal chromatin silencing at subtelomere

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FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0000833 - normal protein level during vegetative growth

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