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Reference - PMID:21354177 - Transcriptional and cellular responses to defective mitochondrial proteolysis in fission yeast.

Reference summary

PubMed ID
PMID:21354177
Title
Transcriptional and cellular responses to defective mitochondrial proteolysis in fission yeast.
Authors
Guha S, López-Maury L, Shaw M, Bähler J, Norbury CJ, Agashe VR
Citation
J Mol Biol 2011 Apr 29;408(2):222-37
Publication year
2011
Abstract
Lon and m-AAA are the principal, regulated proteases required for protein maturation and turnover in the mitochondrial matrix of diverse species. To understand their roles in fission yeast (Schizosaccharomyces pombe) mitochondria, we generated deletion strains lacking Lon and m-AAA, individually (Δlon1 and Δm-AAA) or together, Δlon1Δm-AAA (Δ/Δ). All three strains were viable but incapable of respiratory growth on a non-fermentable carbon source due to mitochondrial dysfunction. Confocal and electron microscopy revealed a decrease in membrane potential and ultrastructural changes in Δlon1, Δm-AAA and Δ/Δ mitochondria, consistent with a respiratory defect and aggregation of proteins in the mitochondrial matrix. To understand the global adaptations required for cell survival in the absence of Lon and m-AAA proteases, we compared genome-wide gene expression signatures of the deletion strains with the isogenic wild-type strain. Deletion of lon1 caused a distinctive transcriptional footprint of just 12 differentially expressed genes, 9 of which were up-regulated genes located on the proximal mitochondrial genome (mitochondrial DNA). In contrast, m-AAA deletion caused a much larger transcriptional response involving 268 almost exclusively nuclear genes. Genes ameliorating stress and iron assimilation were up-regulated, while diverse mitochondrial genes and other metabolic enzymes were down-regulated. The connection with iron dysregulation was further explored using biochemical, chemical and cellular assays. Although Δm-AAA and Δ/Δ contained more cellular iron than the wild-type strain, their transcriptomes strongly resembled a signature normally evoked by iron insufficiency or disrupted assembly of iron-sulfur clusters in mitochondria. Based on these findings, we posit that excess iron accumulation could contribute to the pathology of human neurodegenerative disorders arising from defects in m-AAA function.

Annotation

Multi-locus phenotype

FYPO:0005419 - abnormal mitochondrial crista morphology

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FYPO:0004481 - abolished cell population growth at high temperature

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FYPO:0001934 - abolished cell population growth on glycerol carbon source

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FYPO:0001575 - abolished vegetative cell population growth

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FYPO:0002008 - decreased aconitate hydratase activity

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FYPO:0004130 - decreased succinate dehydrogenase (ubiquinone) activity

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FYPO:0001355 - decreased vegetative cell population growth

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FYPO:0002006 - increased cellular iron level

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FYPO:0003004 - increased cellular reactive oxygen species level during vegetative growth

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FYPO:0005420 - increased level of iron assimilation gene mRNA during vegetative growth

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FYPO:0002664 - increased level of stress responsive gene mRNA during vegetative growth

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FYPO:0003820 - mitochondria present in decreased numbers during vegetative growth

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FYPO:0002344 - sensitive to phleomycin

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Single locus phenotype

FYPO:0005419 - abnormal mitochondrial crista morphology

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FYPO:0002008 - decreased aconitate hydratase activity

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FYPO:0000082 - decreased cell population growth at high temperature

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FYPO:0000684 - decreased cell population growth on glycerol carbon source

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FYPO:0004130 - decreased succinate dehydrogenase (ubiquinone) activity

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FYPO:0000921 - increased aconitate hydratase activity

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FYPO:0002006 - increased cellular iron level

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FYPO:0003004 - increased cellular reactive oxygen species level during vegetative growth

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FYPO:0005420 - increased level of iron assimilation gene mRNA during vegetative growth

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FYPO:0002664 - increased level of stress responsive gene mRNA during vegetative growth

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FYPO:0003424 - increased mitochondrial RNA level

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FYPO:0003820 - mitochondria present in decreased numbers during vegetative growth

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FYPO:0000674 - normal cell population growth at high temperature

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FYPO:0001537 - normal cellular iron level

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FYPO:0004016 - normal cellular mtDNA level

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FYPO:0003118 - normal cellular reactive oxygen species level during vegetative growth

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FYPO:0001164 - normal growth on glucose carbon source

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FYPO:0002344 - sensitive to phleomycin

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