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Reference - PMID:21436456 - Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA.

Reference summary

PubMed ID
PMID:21436456
Title
Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA.
Authors
Zhang K, Fischer T, Porter RL, Dhakshnamoorthy J, Zofall M, Zhou M, Veenstra T, Grewal SI
Citation
Science 2011 Mar 25;331(6024):1624-7
Publication year
2011
Abstract
Pervasive transcription of eukaryotic genomes generates a plethora of noncoding RNAs. In fission yeast, the heterochromatin factor Clr4/Suv39 methyltransferase facilitates RNA interference (RNAi)-mediated processing of centromeric transcripts into small interfering RNAs (siRNAs). Clr4 also mediates degradation of antisense RNAs at euchromatic loci, but the underlying mechanism has remained elusive. We show that Clr4 and the RNAi effector RITS (RNA-induced transcriptional silencing) interact with Mlo3, a protein related to mRNA quality control and export factors. Loss of Clr4 impairs RITS interaction with Mlo3, which is required for centromeric siRNA production and antisense suppression. Mlo3 also interacts with the RNA surveillance factor TRAMP, which suppresses antisense RNAs targeted by Clr4 and RNAi. These findings link Clr4 to RNA quality control machinery and suggest a pathway for processing potentially deleterious RNAs through the coordinated actions of RNAi and other RNA processing activities.

Annotation

GO biological process

GO:0071040 - nuclear polyadenylation-dependent antisense transcript catabolic process

Genes:

GO:0140746 - siRNA catabolic process

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GO cellular component

GO:0000791 - euchromatin

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GO molecular function

GO:0005515 - protein binding

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GO:0016279 - protein-lysine N-methyltransferase activity

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Modification

MOD:00663 - methylated lysine

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Multi-locus phenotype

FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

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Genotypes:

FYPO:0003557 - increased antisense RNA level

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Genotypes:

Single locus phenotype

FYPO:0004488 - abolished protein lysine methylation during vegetative growth

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Genotypes:

FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

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Genotypes:

FYPO:0001645 - decreased protein-protein interaction

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Genotypes:

FYPO:0003557 - increased antisense RNA level

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FYPO:0005522 - increased forward centromeric outer repeat transcript level

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FYPO:0005523 - increased reverse centromeric outer repeat transcript level

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FYPO:0000862 - normal histone H3-K9 dimethylation at centromere during vegetative growth

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Genotypes:

FYPO:0002359 - normal histone H3-K9 dimethylation at telomere during vegetative growth

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Genotypes:

FYPO:0001509 - normal protein localization to chromatin during vegetative growth

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Genotypes: