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Reference - PMID:21847092 - An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer.

Reference summary

PubMed ID
PMID:21847092
Title
An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer.
Authors
Barraud P, Emmerth S, Shimada Y, Hotz HR, Allain FH, Bühler M
Citation
EMBO J 2011 Aug 16;30(20):4223-35
Publication year
2011
Abstract
Dicer proteins function in RNA interference (RNAi) pathways by generating small RNAs (sRNAs). Here, we report the solution structure of the C-terminal domain of Schizosaccharomyces pombe Dicer (Dcr1). The structure reveals an unusual double-stranded RNA binding domain (dsRBD) fold embedding a novel zinc-binding motif that is conserved among dicers in yeast. Although the C-terminal domain of Dcr1 still binds nucleic acids, this property is dispensable for proper functioning of Dcr1. In contrast, disruption of zinc coordination renders Dcr1 mainly cytoplasmic and leads to remarkable changes in gene expression and loss of heterochromatin assembly. In summary, our results reveal novel insights into the mechanism of nuclear retention of Dcr1 and raise the possibility that this new class of dsRBDs might generally function in nucleocytoplasmic trafficking and not substrate binding. The C-terminal domain of Dcr1 constitutes a novel regulatory module that might represent a potential target for therapeutic intervention with fungal diseases.

Annotation

GO molecular function

GO:0003690 - double-stranded DNA binding

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GO:0003725 - double-stranded RNA binding

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GO:0008270 - zinc ion binding

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Single locus phenotype

FYPO:0000659 - abolished DNA binding

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FYPO:0002566 - abolished histone H3-K9 methylation during vegetative growth

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FYPO:0002568 - abolished protein localization to nuclear periphery

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FYPO:0002133 - abolished protein-RNA interaction

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FYPO:0000273 - centromeric outer repeat transcripts absent

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FYPO:0001407 - decreased cell population growth on glucose carbon source

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0002339 - decreased protein localization to nuclear periphery

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FYPO:0002564 - increased mature tRNA level during vegetative growth

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FYPO:0002567 - normal centromeric outer repeat transcript level

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FYPO:0002360 - normal chromatin silencing at centromere

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FYPO:0002563 - normal protein localization to nuclear periphery

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