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Reference - PMID:21949882 - Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones.

Reference summary

PubMed ID
PMID:21949882
Title
Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones.
Authors
Korvald H, Mølstad Moe AM, Cederkvist FH, Thiede B, Laerdahl JK, Bjørås M, Alseth I
Citation
PLoS One 2011;6(9):e25188
Publication year
2011
Abstract
2-Oxoglutarate (2OG) dependent dioxygenases are ubiquitous iron containing enzymes that couple substrate oxidation to the conversion of 2OG to succinate and carbon dioxide. They participate in a wide range of biological processes including collagen biosynthesis, fatty acid metabolism, hypoxic sensing and demethylation of nucleic acids and histones. Although substantial progress has been made in elucidating their function, the role of many 2OG dioxygenases remains enigmatic. Here we have studied the 2OG and iron (Fe(II)) dependent dioxygenase Ofd2 in Schizosaccharomyces pombe, a member of the AlkB subfamily of dioxygenases. We show that decarboxylation of 2OG by recombinant Ofd2 is dependent on Fe(II) and a histidine residue predicted to be involved in Fe(II) coordination. The decarboxylase activity of Ofd2 is stimulated by histones, and H2A has the strongest effect. Ofd2 interacts with all four core histones, however, only very weakly with H4. Our results define a new subclass of AlkB proteins interacting with histones, which also might comprise some of the human AlkB homologs with unknown function.

Annotation

GO cellular component

GO:0005634 - nucleus

Genes:

GO:0005730 - nucleolus

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GO molecular function

GO:0016706 - 2-oxoglutarate-dependent dioxygenase activity

Genes:

GO:0008198 - ferrous iron binding

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GO:0042393 - histone binding

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Modification

MOD:00738 - iron containing modified residue

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Single locus phenotype

FYPO:0004365 - abolished dioxygenase activity

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Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

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Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

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Genotypes: