PomBase home

Reference - PMID:22095079 - The double-bromodomain proteins Bdf1 and Bdf2 modulate chromatin structure to regulate S-phase stress response in Schizosaccharomyces pombe.

Reference summary

PubMed ID
PMID:22095079
Title
The double-bromodomain proteins Bdf1 and Bdf2 modulate chromatin structure to regulate S-phase stress response in Schizosaccharomyces pombe.
Authors
Garabedian MV, Noguchi C, Ziegler MA, Das MM, Singh T, Harper LJ, Leman AR, Khair L, Moser BA, Nakamura TM, Noguchi E
Citation
Genetics 2012 Feb;190(2):487-500
Publication year
2012
Abstract
Bromodomain proteins bind acetylated histones to regulate transcription. Emerging evidence suggests that histone acetylation plays an important role in DNA replication and repair, although its precise mechanisms are not well understood. Here we report studies of two double bromodomain-containing proteins, Bdf1 and Bdf2, in fission yeast. Loss of Bdf1 or Bdf2 led to a reduction in the level of histone H4 acetylation. Both bdf1Δ and bdf2Δ cells showed sensitivity to DNA damaging agents, including camptothecin, that cause replication fork breakage. Consistently, Bdf1 and Bdf2 were important for recovery of broken replication forks and suppression of DNA damage. Surprisingly, deletion of bdf1 or bdf2 partially suppressed sensitivity of various checkpoint mutants including swi1Δ, mrc1Δ, cds1Δ, crb2Δ, chk1Δ, and rad3Δ, to hydroxyurea, a compound that stalls replication forks and activates the Cds1-dependent S-phase checkpoint. This suppression was not due to reactivation of Cds1. Instead, we found that bdf2 deletion alleviates DNA damage accumulation caused by defects in the DNA replication checkpoint. We also show that hydroxyurea sensitivity of mrc1Δ and swi1Δ was suppressed by mutations in histone H4 acetyltransferase subunits or histone H4. These results suggest that the double bromodomain-containing proteins modulate chromatin structure to coordinate DNA replication and S-phase stress response.

Annotation

GO biological process

GO:0140861 - DNA repair-dependent chromatin remodeling

Genes:

Multi-locus phenotype

FYPO:0002097 - decreased protein kinase activity during cellular response to hydroxyurea

Genes:

Genotypes:

FYPO:0006591 - increased DNA damage during mitotic S phase

Genes:

Genotypes:

FYPO:0000972 - increased number of Rad52 foci during vegetative growth

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

FYPO:0000969 - normal growth during cellular response to UV

Genes:

Genotypes:

FYPO:0003906 - normal growth on bleomycin

Genes:

Genotypes:

FYPO:0000095 - sensitive to bleomycin

Genes:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

Genes:

Genotypes:

FYPO:0000268 - sensitive to UV during vegetative growth

Genes:

Genotypes:

Qualitative gene expression

PomGeneEx:0000023 - protein level constant

Genes:

PomGeneEx:0000019 - protein level decreased

Genes:

PomGeneEx:0000018 - protein level increased

Genes:

Single locus phenotype

FYPO:0005011 - decreased histone H4 acetylation during vegetative growth

Genes:

Genotypes:

FYPO:0002097 - decreased protein kinase activity during cellular response to hydroxyurea

Genes:

Genotypes:

FYPO:0004003 - delayed onset of replication fork processing

Genes:

Genotypes:

FYPO:0006591 - increased DNA damage during mitotic S phase

Genes:

Genotypes:

FYPO:0000972 - increased number of Rad52 foci during vegetative growth

Genes:

Genotypes:

FYPO:0000969 - normal growth during cellular response to UV

Genes:

Genotypes:

FYPO:0003906 - normal growth on bleomycin

Genes:

Genotypes:

FYPO:0001690 - normal growth on camptothecin

Genes:

Genotypes:

FYPO:0000963 - normal growth on hydroxyurea

Genes:

Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

Genes:

Genotypes:

FYPO:0004548 - normal protein kinase activity during cellular response to hydroxyurea

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes:

FYPO:0000095 - sensitive to bleomycin

Genes:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

Genes:

Genotypes:

FYPO:0000268 - sensitive to UV during vegetative growth

Genes:

Genotypes: